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13-3590-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 215063 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -591; Region: promoter
    Flanking Genome Sequence: 13-3590-1 - 5-prime edge 
    ACTGTCTTTA TCTTATGTCT AATCGTTTTC TGTGATTTAT ATCTTTGTAT 
    TTAGTGTGCT ACTTATATAA GTTAAAACTC TACACGAATA AAACTCAAGT 
    AGTGAGATTT CGAAGATCAA ATAGTTTGTA AACTACGACG AAAATTACAA 
    AAATTGCAAC NTTGCAAGTG TCACTAACTA TAAATCACGA CATTCTTCCC 
    TTTGGAAAAA TCTTCATTTC TCGACAAAAA ATTTAGGCTT CCAATGATGA 
    CCACAAAAAG TGGAAAAAAA GGATTCTCGT TTCTGAAACG TTTGGCTTCC 
    GCGTTTTCAT TACTGTTTCT ATGCTAGAGA GTATTAGTGC CTTGTTGTCA 
    TGGTCATATA TCTCAATTGA AAATCTCCTA AAACTATATA TTAAATGACA 
    TATAGTATTT TACTAAATTT AGGAATCTTT TCATTTATAT AGTAAAAAAA 
    TAAAATAGTG TCGCTGTTGC CAACCACTCT CTATCCATCT NAGTTTGCAC 
    ATGCAACACA ACCACATGCT AATTGCTAGT GAAACTCTCA TACTGNNTTA 
    ATTAACTCCC TAANTNTTTA TCNNACANAT GATNTNTACG TTAAAAAAAA 
    AAAAANNNTN TTTANATNAA AAAAAAAAAN AAAANTTNCC NNANNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214941 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -469; Region: promoter
    Flanking Genome Sequence: 13-3590-1 - 3-prime edge 
    GTTATAAAAG GGCCAAATTT AAGGAGGAAC AAAATGATGA GAAATAACAA 
    AACTTTCAAA TTTCAACAAC ATGTATCGAA ACGAGTCACT GAAAAATTAT 
    TATTCCACCA AGAAACCCAC TAGCTGACTC AGAGACTTCC TTTGCATTTT 
    ACTCGTGCAA TGTACCAAGG ATGTCCTCGT CCCGAAACAG ATGATACCTA 
    CGTCAAAAAT CACCAACACA TCGATTTAAG AATTTTACAC AACTATAGGG 
    TGTTTTTAGA TCAAATCAAT AGTATTGGGG TGATAAATGA AAATATTATA 
    AAAATTAAAG GATC

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR