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13-3730-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3867594 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -625; Region: promoter
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -625; Region: promoter
      • AT1G11482.1 - [+] show detail
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 13-3730-1 - 5-prime edge 
    GCGATATCCA TGAATCCATA CTCGTCGTAA GCCTGGACAT AGACGTGGTT 
    ACGGACTAGG GAAGGAACGG ATTTGTAGCT ACTAGTTGCA GAGACACAGA 
    AAGATTCAGA TTTTGAGAGG AAAATGCAGA GATCTCCAAT GTCTCGAGTG 
    TAAACAGCAT TTCCTTCTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT 
    TTTTTTNAAN NNNTTTTTTT TTNAAAAANN NCCCCNNNNN NNNCCCCCCC 
    CCCCCCCNTT TNNNNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3867478 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -509; Region: promoter
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: -509; Region: promoter
      • AT1G11482.1 - [+] show detail
        Distance: 0; Region: exon4 (NonCoding)
    Flanking Genome Sequence: 13-3730-1 - 3-prime edge 
    GATATCGCCA AGCCTTTTGA CGATTCCTGG GTCATTCCTG CCTCACCTGA 
    TGCGAACCCG AATCCTTTCT ATATTCCACC TCAAACTATA GAATATACTT 
    TATCTACGAT GCACCCGGAT CTATGAATTT TTTACTTTGT CGTTTCCCGT 
    TACTAGTTTT CGTACCCGTT TCAATGCTAC TTACTCAGGT AGTTCTAGTA 
    GCAATATATG TATTATTGTT CCAATTAATA AATTCAACTC GCTTAAAAAC 
    TAAAACTCAA CTAAACATTT TTCTATAATA CTTTTGTCTA ATCCTAGCAA 
    TACACACTCC ATTTACTAAT ATATACATTA CCTATAAACT GTGTTGTATA 
    CTAATACCCC ATATTCACCA GAAGACTTAT AGAGCATTTC AGTTTGGTTC 
    CGTGTATACC ACATCATCAG CCGAATCAAC AAGTGTAAAA ATCCACGTGT 
    GCATCAGACT GCCACGTAAT CAATCGTAAA TAGTTGATTT CAATAGGGAT 
    AGTTTCGGAT TTTAATTCTT TTTAAGGGGC AAAAAAAACA TTTTTCCGTC 
    CATTGAGGAA AGCAAAGGTT TTCNATATTA ATAAAAATCC GAGAGAGAGA 
    GAGGGGAAGN GGAGAGATTC TGGAGAAGCT GANCCAGACN AAACCNTNAA 
    CCCGNCGCGA GAGAGGATAN ANCGNGGGAG NGAATNTTTA ACCACCTTTT 
    GGGTNTCCGG GGGNANAAAA TNCNGTTTCA TTGGGAGAAA A

AT1G11480.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11480.2

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11482.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR