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13-3732-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2392857 [Map]; Strand: w
      • AT4G04710.1 - [+] show detail - calcium-dependent protein kinase 22
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3732-1 - 5-prime edge 
    CTTCTTGATA TCTTCCAATG GCTTCCCAAG AATCGTCTCT TGCTTTTGAT 
    CCGAGACGAT ATCAGAAGCT GTTAGGGGTT TACTTCCGCA GAAATTACCC 
    ATGAACCTTG GTTAGATTTT TTCTAGGGTT TTAGGAAGAT GAATCGAACC 
    AAGATTGTTA AAATGTAGTA GGAATATTTA AGGAGCTGTG GTTTTGTGAT 
    GAAACNATNC CTCCTTTTTG GCTGGAGTCA TATAAATGGT GAATGTGNTG 
    GTTTTTTTTT TNGGGGNTTT TCCCCCNGNT TTTTTTTTNN GTTCAANCGN 
    GGGAAAAATG GAAAAAGGNG GTTNCCATTA AGGNGANNNT AAAACGGGGN 
    CAANNGGNCA AANTTTTTTN CNNCCCNAAN TTNTCCCNCA AAAANNGGNC 
    CTTTGGGCNT TTTAAAAATC NNATTTNGGG GCTTTAAAAN TTNCNAAAAN 
    TTTAGNGGGG GGGGAGTTNC NNNANNCCCN CNAAANCTTT TTTAAAANNG 
    ANCTTTGGNN TTTTNAAACC CGAAANTTNN NAAANGGGGG GNANTANNAG 
    CCCCGGGAAA TTTANAGTNG NGATCCCCTC GTNTAAAAAA AAAACNNANC 
    CNGGGCCCTT TAAANTNCCA AANNTTNTNT TNNGGGCCCT NGGNGTGTNT 
    NAAANNGNNT NTTNGNNCNC NNNGNAANNN GGNGCCCTNA AAAAAAATNN 
    CNNTNGNGGG GNAANANACA ANGNGNGGGG GNNNNNTANC TCTTTNNAAA 
    AANC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 373786 [Map]; Strand: c
      • AT4G00885.1 - [+] show detail - MIR165/MIR165B; miRNA
        Distance: -3795; Region: intergenic
      • AT4G00890.1 - [+] show detail - proline-rich family protein
        Distance: 174; Region: intergenic
    Flanking Genome Sequence: 13-3732-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACTCACTG TGAGTTAGCT 
    CTTCTCTCAC TTTTCACTTG TTTAGTTTTA AATTGCTTCT TACCATGAAA 
    AAACACATCC CAAAATCATG GTTTAATGGG CCGGCCCAAA GCT

AT4G00885.1

Model type
miRNA
Short Description
MIR165/MIR165B; miRNA
Curator Summary
Encodes a microRNA that targets several HD-ZIPIII family members including PHV, PHB, REV, ATHB-8, and ATHB-15. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCGGACCAGGCUUCAUCCCC
Link
InterPro Scan - TAIR

AT4G00890.1

Model type
Protein coding
Short Description
proline-rich family protein
Curator Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
Computational Description
proline-rich family protein; Has 74402 Blast hits to 44432 proteins in 1604 species: Archae - 100; Bacteria - 7075; Metazoa - 32308; Fungi - 16616; Plants - 5983; Viruses - 2030; Other Eukaryotes - 10290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04710.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 22
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 22 (CPK22); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 128215 Blast hits to 115900 proteins in 4387 species: Archae - 146; Bacteria - 12831; Metazoa - 47241; Fungi - 17786; Plants - 26994; Viruses - 481; Other Eukaryotes - 22736 (source: NCBI BLink).
Link
InterPro Scan - TAIR