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13-3801-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12096398 [Map]; Strand: w
      • AT3G30456.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1818; Region: intergenic
      • AT3G30460.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -7975; Region: intergenic
    Flanking Genome Sequence: 13-3801-1 - 5-prime edge 
    GTTGCCATGA GCAACCCAAA CTCAAAGCCG TCCTCAAACC TCAAGTAGGA 
    GCACCTACAA CTTTTCCGAA GACTAACGCA AAAACAAAGC GGCTATAGAA 
    AACTAATACC CTTACCCGGC GACACGAGAG CATCTACGAG CAGCTAGATA 
    AGCTGCCTCC AGCCACCAAT CTTTTTGCGA ATCAACAAGA AATATCTCCC 
    ACAGATAGTG AAGCCACCTA GACCAAACCA CCACCTCTAT TCCCCACAGA 
    GAACCCCACC AGGGCAACAC GCAAAGAGAT CTTCGCTGCA AACCAGCGTA 
    GGCTGAAACT ACAACAACAA AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 12096282 [Map]; Strand: w
      • AT3G30456.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1702; Region: intergenic
      • AT3G30460.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -8091; Region: intergenic
    Flanking Genome Sequence: 13-3801-1 - 3-prime edge 
    ATGGCAACAA ATATGAGGAT TCTACGTCCT TCGAGTTGAG GAAACCACGC 
    AACTGTCTGA CCTTTTCTGT TTAGAATCGG TGTGTCTTCA TGGGTTTCTG 
    CTTTTGTTCG CTAGTATTTG CTTCATGTTT TCTACNTTGT GAATTGTTAT 
    TTTGGTCTTT TTGTAGCTTT CAGTTTCTCA TTCTTCTTGT TTTCTCTATA 
    ATTTTTGTCA AAAAAATTCG AAAAAAGTAA AAATTTTAAC TTTTACTAAA 
    AATAAATATG GTTATTGTTC ATTTAGAAAT ACAAAGAAAG AAAAACTTAT 
    AAAATATAGA ATAAAAAACA TTTATGTATT TTTCATATAA AATTCGACAA 
    ATCATGTTTT ANAACTGCTC ATTTGTACCA AACTGCTCAT GCCCTGAGAC 
    TGTCGGATTT TGAAGTTTCA ATATCCTNCA CNNGTNANCA NAGAACAATA 
    TGGGANNAAG NAGGTGNTGA TANTCGANTC ANTNTANNCT NGAGANAGAG 
    AAAGGGTNCA GCCTTACCCA CNCTCCTNTA NTACCAGGCT GACTAAGTCT 
    GGCCTAAGAA ACAGTTNCCC TTTCTCACNC AATGGCNAAN GNCACNNCAA 
    ACTGNAAGAC ACANACCTCC TNATGNCTCG NAANTCCATN NCTNNTATTT 
    AAATNNNGGC TACCNGTGGN CGNNCGTGTA NTAGNGTAGA CTCTAAAAGG 
    NCCCNTTGTT TAANNATACC NANGCTAGAA ANNNANT

AT3G30456.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G30460.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02340.1); Has 10074 Blast hits to 10050 proteins in 286 species: Archae - 0; Bacteria - 6; Metazoa - 2769; Fungi - 830; Plants - 4947; Viruses - 70; Other Eukaryotes - 1452 (source: NCBI BLink).
Link
InterPro Scan - TAIR