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13-3844-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13525370 [Map]; Strand: c
      • AT3G32975.1 - [+] show detail - transposable element gene
        Distance: -1256; Region: intergenic
      • AT3G32980.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 727; Region: intergenic
    Flanking Genome Sequence: 13-3844-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTATTAGTA ATGAAGGATG ACTCAAATCG AACATAAGTC 
    TCTCTCTCAT ACTAAAGACT CAAATTCTTC CAAAGATCTA AAAGTTCTTT 
    TGATTTGATA TTTTGTTTGG AATATAACCT CAAGCCTCAG TTTATGACNT 
    TATTGACCCT GTATCTTTCT CAAATAAACC ATTTTTTTTT TTNTTNTNTT 
    GNAAACCAGG GAAAANNTTN TGGCTTNAGT TGGNTTGGGA NCCCCNTTNT 
    CCGGNTTAAA AAATNNNACN TNNNCNNGTT NNNNAAAAGG GNAATAAACC 
    CTGGGTTNNG GATNNTANGG GNCAANAATG GGNGGTNNNC TTTAAAGGTT 
    GGNCCCCGGA NCTANTTGGG NANTNAGNCN NNANANCCCC NANTNTTNGT 
    TCNCCNTTNA ANCCGNCAAN TTTNCCAANT TTTNGNCNNG CNAAANANTT 
    NNTNANCGGN GGAAATTNTT TGGTAAAAAG GTNNCANCNA NNTTTTNAGT 
    TNNAAAANCG TTTNCNCNCC CTTNGAAAAA TAANTTTNAA ACCTTTTAAA 
    NTTTANCCCG GGNCAANTTA CCCTACCCAA NGTTTNGATT TAAACCTAAA 
    CCAAAANNAN TCGACCTTAA NAAATTTGGA AANTCCCCNC NTAAATCCTA 
    ANCTTTGGGN CCTAAANAAC NTGCCCCAAN TGGNNCCNGA NCGGAAATTT 
    TGGGGAANCC NNAAANNCCC NAANTCCATT TTTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 13525449 [Map]; Strand: c
      • AT3G32975.1 - [+] show detail - transposable element gene
        Distance: -1335; Region: intergenic
      • AT3G32980.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 648; Region: intergenic
    Flanking Genome Sequence: 13-3844-1 - 3-prime edge 
    GTTGTACCTT AGGATCAAAT GTAGACTAAG ACTCTATTTG TTGCGTTCAC 
    TATCTAGATA GCTCCTCACA TGCTGGATAC AAATTGAACA TAAATCTTAA 
    AAAGCAATAT AAGGCAAAGA GACTAATCAA ATATCACCAA CNGTGGTATT 
    GGCCCAATAT TAAATCTTCC AAGTGAAGTG TTGGCTTCAA CGCCCGATTG 
    AGGGGGATCT CCGCTCGAAA GTAGATGAAT T

AT3G32975.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-133 P-value blast match to gb|AAL06422.1|AF378081_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT3G32980.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR