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13-3854-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3752272 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-3854-1 - 5-prime edge
    GGGGTNANCA CTNTNTTGGA GNTNCCAGAC CAACANANGN AAGTGGCAGC 
    ANTCCTGNTA NCTGGATTGG TAGNAGGGAG ANGCNNAAGG NTACGGGNAG
    CNCGGCCTGA CCNTTATCGC GACGTTGGCT CATCNTATAG AACNGACCNC
    ACCGATGCTC ACATTACATC ACATNNTGNC TACNANTCCN GCATCTTACA
    TAGAACTCTA ACCACGTCAC AACCCGAAAA CATCTNTCAT TATACTTANT
    AATCTCNTGA CGGTAATTAT CGATGAACCG CGATGTTNAC ACCATACAGA
    ATCACCTNAC AAATACNGTN NGGGATTANN AANGGGGGAN GCGTANTGAG
    CACTATGGGA TTGAANGATA TGCTGNGNGG ATGGNGCACT CNACANTNAC
    TCGNTTGATC TACACCATTA CNGTGAANGN NNCTCNNANN GTAGATGNNT
    GATATCATCT TCNTTNATTT CNTATATGGA TGANNTCCNA AGNGNGTCTG
    CCNNTCTTGN ATTTTGATGC ATAACTTAAG TTTTTAAAAT TATAATATAT
    CCTTGTTCAA TCACATAGAT AACATGACCG AAGCCCTTTT GTTCTTGTCT
    CATTTCATGG GAGATATTCA TCAGGTTTAT TACTCATCAT CGATTCATTT
    NACACCTNCN CACATATANC TNTATTTCCA TGTNAAATAT TTAATTAACA
    TGGNTTTTTT TTTTTTNNTN AAAANCCNNN NNNNNGGGGA NNNAAAAN

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR