1. Home
  2. Mutant Lines
  3. 13-3888-1

13-3888-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1086567 [Map]; Strand: w
      • AT5G04020.1 - [+] show detail - calmodulin binding
        Distance: -21; Region: promoter
    Flanking Genome Sequence: 13-3888-1 - 5-prime edge 
    GNTTAAAAAC TAACAAAATC GGTTATACGA TGGCAACATC GGATTCGACA 
    TTCTCTGTTT ACTCTAAAGT TTCTAGCTTT TTGATTGATT GTCACCGCAA 
    ATCTCTCTCT GTTTTTTTCT CTTTTTCAAA GACAGAGATG ACCAAAATTC 
    ACAAAATTGC AATTCTTCTT ATGTTTCTCT GTGTTCGTCA AAGATCGGAA 
    CNTTTTTATT CGTTTTCTTT GTTTTGTTTG ATTCGTGTTT GAACACTCTT 
    CGAAGATGAG AAAGTCGCCG TAATTGAATT TTTATTTTTT ATTTTCTTGC 
    TGATGTTGAA ATTTATAGCT ACCGTTAGAT TTCGATAATT ATTATTTTCC 
    TTTCTTTACT TTTCCTCGAT ACAAATATCA TTTGACCTGT TTTAATAATT 
    AGTACAAAAA AAATTCTGTA AAATTTAGGA AATTTTAGTT TACGATAAAG 
    AAATGAATTT TGTAACTTAA CTCAAAATTT ATGTCAATTC GTTAATTAAA 
    CGTTTGCGTT ATATATATAT AGACATATTA GTATCAGTTT TTGTTGATAG 
    AAAAGAAATC TGAAAAGAAA GAGCGTTCAT TGACTAAGAA CATTTAAACG 
    ACATTTANTG ATATAGTGAG GCACAAANTA TCTGTCTNTA ATAATTNNCA 
    GGCTNAATAC ACATANTAAA TGGAGGGGGG GGAATTAATN GAACAGGGAA 
    TGNGGGGGNN AGNCCGCTAA TAANAACTAC GNAANTNATT GNGCGAAAAA 
    TCAAGAAAAN TNTTTCAACN NTTTNCGANN ANANANAAAN AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30346796 [Map]; Strand: w
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon20 (CDS)
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: -630; Region: promoter
    Flanking Genome Sequence: 13-3888-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAGG 
    ATACTTGAAT GGCAGCTTGA TTACTGGTTC ATCATCCGTC AGTCCTTGAC 
    TCGCCATACC AAAGGCATAT CCTAATGCAA CCCCTACAGG AACTGCCACA 
    GCATTCCCAA CCTGGATGTA CCTACAAAAT TTAGATTCAA ACCCAGTTTT 
    TACATACATT AGGATCTCCA GTTCAAAAAC AATCATATAC ATAGATAGAA 
    AAGCAGCAAG AACCAAGGAC TTACTTTTCC TTAATTGTTC CACAGAGCTT 
    GTAACAATCA GGGAACCCCT GTAATCTCGC ATTCTCACGA ACAGACAACA 
    CACGGTTTTG CATTGGATGG ATTACACACT GCATCAACCA GTTTTAATAA 
    ACCAGCCACT AGAGAATT

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80745.1

Model type
Protein coding
Short Description
Transcription factor TFIIIC, tau55-related protein
Computational Description
Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT3G15420.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04020.1

Model type
Protein coding
Short Description
calmodulin binding
Computational Description
calmodulin binding; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT2G38800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR