1. Home
  2. Mutant Lines
  3. 13-3892-1

13-3892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17920641 [Map]; Strand: c
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: -19; Region: promoter
    Flanking Genome Sequence: 13-3892-1 - 5-prime edge 
    GGGGAAATGT AGGAAGAGAA TACGCCATTG TTTCTTTACT TTGTTGAGTG 
    AGTGAGAGAG TTCACGATGA AAACAATTTA AAAGGAGAAA TGTTTGTACC 
    CTCCTATTTA CGAAAGTGCC ATTCAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17920731 [Map]; Strand: c
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-3892-1 - 3-prime edge 
    CNCCGTNCCA GACCGTTTTA TCCCTAATTT CCCCAAGCCT TACCTTGCTC 
    GTCAACCAAA ACTTCTTCCT CCTTGGCTAC CTTCCGATCT CCTTTCTTAA 
    GATTCAATGG TTCCACTTNC TTAATCCCCT CCTCTATCTC CATCACTTCA 
    CGTGGCACAT CCTCCCCGAC CATCATCCCA CGTGCNTGCC GCCTCAGAAT 
    CCGACNTCTA ACGAAGCCCT AGCCAACACA ACCTTCCACG GCCTCTGCTA 
    TGTCTTGAAA GACAACATAG ACACCGACCA GATCATCCCA GCAGGAGCCG 
    CTTGCACCTT NCCATCGAAC CAGCAAGAGC GTGATGAGAT CACCGNTCAC 
    GCTCTCTCTG GTCTACCAGA CTTCCACANA ACACGGGTCA TTGANCCANG 
    AGAGANCAGA TNAAAGTACT CAATCATAAT CGGCGGNGAA NNCTTTGGTT 
    GCGGATCGTC ACGTGAACNT GCTNCGGGCT GTCTNGGAAC ACCTGGAGCT 
    AANGCCATAN TNGCNTGNAN CTNACACANG NANTCTTNTT CCGAAANCGG 
    GNTGGCTNCA GGANAGGTGT NTNNCGCTTN AGTCNGAAGG NTCANNGNNC 
    GAGANGAAGT GTCANAAANC GANTANACNN GCGATTNNAN GGCNGNGGGA 
    TNGGGGGTNG TTNACCGNGT TATTCNNNCG NGGNGANNAA AACATAAANC 
    NNAACNNGGA ACGAGNGNTC NNGACAANGN ANTCGATNCA GNGGGATTTG 
    AGNNTACNCC GGGGNNG

AT2G43100.1

Model type
Protein coding
Short Description
isopropylmalate isomerase 2
Computational Description
isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
Link
InterPro Scan - TAIR