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Mutant Lines
13-3902-1

13-3902-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 25608757 [Map]; Strand: w
- AT5G63970.1 - [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
  Distance: 0; Region: exon3 (CDS)
- AT5G63970.2 - [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
  Distance: 0; Region: exon2 (CDS)

GTCCACTCAT TGCTCTTGGT AAAGTCAATT CCTAGAATCA GATTTGAAGA 
TTCAAGTCCA GCTTCTCTCA GAGAAGTTAT CACCTAAAAA GCAAAGTTCA 
CAAGAAATTC ATCACTATGA AAGAGACTAA AATCAAGAAA TAACTAAGTA 
AGTTTATGAG ACCTGATCCA AACTGCTGAA ATGATCAGCA ATATACGAAG 
GTTGCTGATT ACGTTTATTG CTCATGTTCA TTGAAAAAAC CCTGCAGCAC 
AAGAACCTTC AGAAATCCAA TCTTTAGAGA AGAAACCAAT CAAAATCAAG 
AATAAAAGAT ACAGTTACAC AAGTGGCAAG TATATATCAA CCTGGAGTTT 
GTTGAAAACA CAAAAGACTT CTCGGAATCT TTCTTGTAAG AAAAAACTTT 
TGTTGGAGAT TATCTTCTGT AGGAAGATTA AATTATTAAA AAGATGGCAC 
AAAAGAGAAA TATGAACATA TAAAAATACT TTAGCAGAAA AAAATGAACA 
TATAAAACTA TAGAAAGTGG GTTTTGTTGA ATCTTGAAAG TTAGTGGAAC 
GTGACCCTTT GCTTGCGCCG GCAAATAATC AAAACGTATT TTGCTCTCTC 
ACACGCCATC ATCAATCTAG AAATCTTTTT TAGNCTTGNC TCTGCGNNAT 
TAATGATTTA TCCNTAACCC AAATCTTNGA CCAANTTTCA CCANGATTNA 
TGTGGNAACN GGGGN

3 prime edge [+] show sequence

Chromosome: 5; Position: 25608642 [Map]; Strand: w
- AT5G63970.1 - [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
  Distance: 0; Region: intron3 (CDS)
- AT5G63970.2 - [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
  Distance: 0; Region: intron2 (CDS)

GNAGTGGACA GGTAATTATT TGATTTGATA AAAAATGCTA CACATGTTTA 
CGAAAAGATT CAATGGTTTT GGTTAATGTT CTGAATTTTC ATTGCAGGGA 
GATATTCATT CAATAGAAAA AGCCTTCATG CCATTGGTAA AAGACAGAAT 
CCATATGAGA AAGCAATATC GATTATTGGT CGTACTTTGT CTCCCTTTGA 
TGAAGATGAT CTTATACCTT GTTTCGGTTT TGGCGATGGT TAGTTTCTTA 
TTTCTTGCTT TCAAGATGAA TGAATAAGAT AAACCAAAGT TCTTAATGGT 
TTTATGTTTT CTTCTTCCTG CAGTAACAAC GCGAGATCAA TATGTATTCA 
GCTTTTATCC CGAGAACAAA AGCTGCGACG GATTGGAAAA CGCANTTAAA 
AGATATAGAG AGATTGTCCC ACATTTGAAG TTGTCCGGNN TTTTTGAACT 
TTCAAAAATG GAGCAGTTTN GTTCTCTCTT ATNGNAAAGA TTAATCAGCG 
TATTCTTCCC TCACAGGTNC TACCTCGTTT AGCACCGGGT TATNTGATGC 
TGCCATCACA TATTNCGAGC AGAACATTAT GCAATNNCAA TGTTCTCNTC 
NTNATCGCCA GATGGTTCNG GTCNCGAANA ATNCCAAANG NGGCCCCTTG 
GTCCGGANTC AGTCCCCNGG AANANGCTCC TTCGNCCTCG NTTAATGGNA 
NGCNGAGGGN NACCTNNNCT ATANTCGNNT TTCNNGGNTN NGG

AT5G63970.1

Model type: Protein coding
Short Description: Copine (Calcium-dependent phospholipid-binding protein) family
Computational Description: Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G63970.2

Model type: Protein coding
Short Description: Copine (Calcium-dependent phospholipid-binding protein) family
Computational Description: Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 1765 Blast hits to 1760 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1037; Fungi - 2; Plants - 411; Viruses - 37; Other Eukaryotes - 278 (source: NCBI BLink).
Link: InterPro Scan - TAIR