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13-3907-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7764355 [Map]; Strand: w
      • AT1G22030.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: -3799; Region: intergenic
      • AT1G22040.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -3569; Region: intergenic
    Flanking Genome Sequence: 13-3907-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA TGATTATATG TGTTGTGCAA GACATATTTC
    GAAAAATCAA GATGACAAAT ATTATTGACT TAGCATTTTT TTTTTTAATT
    ATGTAAANNA NCCCNGGGAT CGACAGGGAC TNTNACTAGG GGGANNTNTN
    CCTGNCTCCC CAAANGGNNA AGTTNTNATN AANCTTAATT AAGGGGGNAA
    NCAATNGANA AGGGGGCTNA ATCTTNGATT CAGGGATTTC TAATCGGANG
    GGGGAAAAAA AAAAAGGGGG NCTAATTNGA TTNTTTNNAN GGGNCAACTN
    GCCCCCCCTT AAAATNTNGA AANGGGCCCN TTTTNTTCNA NNTGNANCCT
    TTTCNCCATT TTANAANATN CNGNANAANC AAAATNGGAT TCAATCCCAG
    TAANCCTAAA AGTTTTCNCN TNGCNCAAAT NAANAAGGGN CTTTCNGANA
    ATNAAAANNT TTNAATNTTT TNTTAGGGGG GAAAACCCCC TNTCAAATTT
    GGGAANGNNT NTNCCCTAAG NANCCTTTCN TTCNCNANNA AAAANNTNTN
    CTTNNGGNNN NANATTNCGT TNNAAAAAAC ATTTGGANCN AACTTTNANT
    AATTGGNGGG NGNTGGGNTT NANGNNNCTA TCNAANNNGG GGGAAACGTT
    AAAAANGGTT TTTTNTGNTT NCCCCNGNNG TTNNAAATTT NNAAAAAANA
    AAANGANGGG GTTTTTTNTT NNAAAAAAAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7764319 [Map]; Strand: w
      • AT1G22030.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST...
        Distance: -3763; Region: intergenic
      • AT1G22040.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -3605; Region: intergenic
    Flanking Genome Sequence: 13-3907-1 - 3-prime edge
    AANTGAAAAC GGTAGAGGTA TCAACTCTAT TCAATGTCTT TTTGGGCATG 
    TCAATGTTCG AATAGTCATC GGTATTTTAC ATCAGAATG

AT1G22030.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22040.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 10813 Blast hits to 5578 proteins in 328 species: Archae - 18; Bacteria - 659; Metazoa - 8206; Fungi - 35; Plants - 1449; Viruses - 72; Other Eukaryotes - 374 (source: NCBI BLink).
Link
InterPro Scan - TAIR