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13-3911-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24413913 [Map]; Strand: c
      • AT5G60710.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-3911-1 - 5-prime edge 
    CCAACTTTAT CTTATGATTC GAATCATTTT ATCTTCATCA AGAATTTGAC 
    ATTATAGCTG GCTTAAAATT GGCTTCTATT TGTTCTGTCT CTTTCCCCGG 
    TTTATAGTGC CTTTTGTTTC TTTCTCTCTT TTTTGTTTTT GTTTTGTTTT 
    TGAGTATAAT TTTTCTTGGT AGTGTTGAAG AAAGATGAAC AATTTGTTGT 
    CATGTAATTA TCAACTCTCC CAAATGGAGC CACNTGTGGG GATAAAGTTT 
    TTTGGCAATA GTCAAGTGCA CTTCAAGGAC CAATCTTTTT TTGGTTGCTT 
    TTTTTACATT CAACTTTCTA ATTATTATTG AAAGATACCC TTCTTAGTGT 
    TCTAAATATC TACTGTGAAT TANATATTCT CCTTAATCTA GTATACTTTT 
    TTGTTCATGT TATACATCTA GTTAAACTAA AATTGCATTT TCTAAATCCT 
    AACCAAGATA ACTGTTAGTA TTAACCATGA AATTACATAA CTACATACAT 
    AAGCATTTGG TTTAGCTTTT GAAGTTNCAC ACTTTCTTTA ACTTTNCTTT 
    GCATTGNNGN NNTCTTTTTN AAGNNNGATC TTTCTGGCGN NGAATTNACN 
    TAAAAAGCTA CNANNNNNGG NCNNNNNCCN CNCCNNCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24414029 [Map]; Strand: c
      • AT5G60710.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-3911-1 - 3-prime edge 
    AAAGTTGGTT ATGGAAGAGA GACCTTTACC AAGTGTACTA ATCTCACTAA 
    TCATTCTACA TATTCATCTA CTAATCCCCA TTTAGCCCTC TTAAGACATT 
    ATTTACTTTC ACCCATAGTT TTCAAAAAGG TCAATACTTT CAAAGCCTGT 
    AGGTCTCTAA AACAACAAAC CTATTGACAG ATTCTAAGTT GATGATAGAC 
    ACAAAACATA TGAGGGTCAT AGTAGTTGAA AAAACACATC TAATTTTTTT 
    ATGAAACATA TAAAAGCAAC TAATAAGATC ATTTGATGTG TGTGAAGATC 
    CAAACACTTT ATAGGAAAGC AAATTAGTTG AATAATTAAA CAAATAATAA 
    AGTAAGTTTA GATACAATAA CAGCTAGTAA AAACTAAATT AAAATTAATT 
    TTTTAGACTC CCAAGAAAGA TTAGCCCTTG GATTTGCTGC TTAACCAAAT 
    CACAAATTTG AACCACACAA GGATC

AT5G60710.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR