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13-3936-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3866957 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: 0; Region: exon1 (5UTR)
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3936-1 - 5-prime edge 
    ATGGTTCGTC TGGTTCAGCT TCTTCAGATT CTCTCCTTCT TCCTCTCTCT 
    CTCTCTCGGA TTTTATTAAT ATCGAAAACC TTTGCTTCCT CAATGGACGG 
    AAAAATGTTT TTTTTGCCCC TTAAAAAGAA TTAAAATACN AAACTATCCC 
    TATTGAAATC AACTATTTAC GATTGATTAC GTGGCAGTCT GATGCACACG 
    TGGATTTTTA CACTTGTNGA TTCGGCTGAT GATGTGGTAT ACACGGAACC 
    AAACTGAAAT GCTCTATAAG TCTTCNGGNG AATATGGGGT ATTAGTATAC 
    AACACAGTTT ATAGGTAATG TATATATTAG TAAANGGAGT GTGTATTGCT 
    AGGATTAGAC AAAAGTATTA TANAAAAATG TTTAGTTGAG TTTTAGTTTT 
    TAAGCGAGTT GAATTTATTA ATNGGAACAA TAATACATAT ATTGCTACTA 
    NAACTACCTG AGTAAGTAGC ATTGAAACGG GTACNAAAAC TAGTAACGGG 
    AAACGACAAA GTAAAAAATT CATAGATCCG GGNGCATCGN AAATAAAGTA 
    TATTCTATAG TNNGAGGNGG AATATAAAAA GGATTCGGGT TCGCATCAGG 
    NGAGGCNGGA ATGACCCAGG AATCGNAAAA GGCNNGGCGA TATCCATGAA 
    TCCATACTCG NNGNAGCCNG GANATANANG GGGTNACGGA CTANGGAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3866841 [Map]; Strand: w
      • AT1G11480.1 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: 0; Region: exon1 (5UTR)
      • AT1G11480.2 - [+] show detail - eukaryotic translation initiation factor-related
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-3936-1 - 3-prime edge 
    CGAACCATAA ACCGAGGCGA GAGAGGAGAG AGCGAGGGAG GTGATCTCTT 
    ACCACCTCTT CGTCTCCGGC GGCGAGAAAT TCAGTTTCAA TCGGAGAAGA 
    GAGGAAAAAC AAAGCGATAC GCGAGAGAAA AAGTTGTGCA ACGATGTCAA 
    AGAAGAAATC GGCTGCCATG ACGCTTAAGG ACTTCCATGG CGGCTCAATA 
    CCATCTGATC TCCCTCTCCC TTCCGCTCCT GGAGTGTAAG TCTCTATTGA 
    TTCGTTCCCT TTAGATCGCC TTCTTAGTTT ATATACTTAT CGGAGATCAA 
    TCGAATCCTT CTTTTGCTTT TGTGAGATTC GAGTGATGTT TTCTGGTGGA 
    CAAAATCTCG TTTATCCCTA GGGCTATTAT TAGATCTACA TAGAAATTTT 
    CATTTTCTGA TTGTTTAGGT CTGTTGTTGT TTATCCTGAT CGATTTTTTC 
    CTTTGTAGGA CTCCGAAGGT TATTCCGGAT CGACCTGTTT TTGATAGAGC 
    GCCTTGGGGG AATT

AT1G11480.1

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; Has 394 Blast hits to 370 proteins in 111 species: Archae - 0; Bacteria - 23; Metazoa - 177; Fungi - 53; Plants - 82; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11480.2

Model type
Protein coding
Short Description
eukaryotic translation initiation factor-related
Computational Description
eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR