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13-3973-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 193035 [Map]; Strand: c
      • AT2G01430.1 - [+] show detail - homeobox-leucine zipper protein 17
        Distance: -2666; Region: intergenic
      • AT2G01440.1 - [+] show detail - DEAD/DEAH box RNA helicase family protein
        Distance: 666; Region: intergenic
    Flanking Genome Sequence: 13-3973-1 - 5-prime edge 
    CATGGGAGGT GGGTTGATAA AGACAATCAT GAAAAGACAA TTCTCATGTT 
    TAATTTGAAC ACTACAAGAC CAAAAGTTAT CTATCACACA TAACTATGCC 
    GGCTTTTAAT CCCTGTTTTG TTAACTACTA TAGTTTAAGA ATCCCTTAAT 
    TGAAACCTGC TTATGAGTAG CAAAAGAAGA TGAAATAGGT AACAAGAGGT 
    TTGGATC

AT2G01430.1

Model type
Protein coding
Short Description
homeobox-leucine zipper protein 17
Computational Description
homeobox-leucine zipper protein 17 (HB17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 18 (TAIR:AT1G70920.1); Has 8030 Blast hits to 8017 proteins in 519 species: Archae - 0; Bacteria - 0; Metazoa - 5631; Fungi - 276; Plants - 1985; Viruses - 4; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01440.1

Model type
Protein coding
Short Description
DEAD/DEAH box RNA helicase family protein
Computational Description
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR