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13-4034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3073270 [Map]; Strand: c
      • AT3G09990.1 - [+] show detail - Nucleoside transporter family protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 13-4034-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC CTTGTTCTTA GTGTATCTAC TGACGTTTAG 
    CATTTTCCCT GGATTTCTAT CGGAGGATAC GGGAAAATAC AGTTTAGGAG 
    ACTGGTAAGA CCAAAATGCT AATTTACTCA TGACTATTTT TGGAAAATTG 
    ATAGCTAAGA AAAAACGGTT TAAAACAGGT ATGCACTAGT GTTGATAGCA 
    GTGTTCAACG TGTCGGATTT GGTTGGGAGA TACGTTCCCA TGGTCAAGAA 
    GTTGAAGATG AAGTCGAGGA AATGTCTCTT GATAACGTCA TTGGGACGTC 
    TCTTGTTGAT TCCAGCTTTC AACATCACAG GCATATATGG AAGCCAAGGC 
    TGGATGATTT TCTTGATGTC CGTTTTGGGA TTAAGCAATG GATATTTGAC 
    TGTTTGTGTC ATAACATCAG CCCCATATGA TTTATTGGTA TTTCAAATTC 
    TCCCTTTATT TATTTATTTT AACTTTTTCG TGAAGACGAT ATTANTTTAN 
    AAATGATGAA AACTGGTTTT AGGCACCGGA GCAAAATGCA CTANGAAACT 
    TGNNGGNGTT ATATATTTNN NGANGGATGT TNGCANGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2705764 [Map]; Strand: w
      • AT3G08885.1 - [+] show detail - pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); b...
        Distance: 0; Region: exon1 (NonCoding)
      • AT3G08890.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -868; Region: promoter
      • AT3G08890.2 - [+] show detail - Protein of unknown function, DUF538
        Distance: -872; Region: promoter
    Flanking Genome Sequence: 13-4034-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTA 
    CCTAATTCAC CTTCTATTTT GTAACAGGTT GGTTGTGCAG TGGTTGAGAC 
    AATGTCTCGT ACGTGTACCA TGCCATGTAT GCGTATTTCG ACAGAGAAGA 
    CATAACCTCT TAAGGGTTTA GCCAAGTATT TATCGTTAAA ATTTCATAAT 
    CATTCTAAGA AACAGAAAGT TATATATCTT CTCACTAATC CTAATTGCCT 
    TTATAATTGC AGATATGTCA AAGAATCAAG CAACGACGAA AGAGAGCACA 
    CAGAGAAGTT CATGGAGTAT CAGGTTTCAT AATCTTGTTT CACAGTTTCC 
    ACAATGATTT TTGTTTCTCA CTGTTCCTTC CCTCTTAATC AATAGATATC 
    TAATTTTCCA ATGTGGTCCC TAAAGAAGAA CTAAGAACCC AAATCTATCT 
    AAAGCCAATA AGCCATTAGT GAAACCAGAA GTTGCAGAAG GTACCCGTTT 
    TGTTAAGAGT CCATTAAGGT GCTAGAATCG TATGTGGTCT TTGCTTCCTC 
    AGAGATTCGA AGATGTGAAG ATCATATCTG AAACTGAGAT ACACGTACGA 
    GATCACTATT AAAGCCAATA TTATAGAGAC AAGTCACAGA TACTATCTGA 
    TGACATGTAC TTCGATTCTT ACCTAAAATG TAATGACATG TTACTTTGTT 
    TCTACAAGAT TGACAATTCC TAAGCACAGA AGCTATGAAA AGTTCATGAT 
    CTTTTCGTAA AGAT

AT3G08885.1

Model type
Pseudogene
Computational Description
pseudogene, ferritin, similar to ferritin GB:S71265 (Arabidopsis thaliana); blastp match of 48% identity and 2.0e-29 P-value to SP|Q96540|FRI1_BRANA Ferritin 1, chloroplast precursor. (Rape) {Brassica napus}
Link
InterPro Scan - TAIR

AT3G08890.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G08890.2

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09990.1

Model type
Protein coding
Short Description
Nucleoside transporter family protein
Computational Description
Nucleoside transporter family protein; FUNCTIONS IN: nucleoside transmembrane transporter activity; INVOLVED IN: transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Delayed-early response protein/equilibrative nucleoside transporter (InterPro:IPR002259); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G05120.1); Has 921 Blast hits to 872 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 408; Fungi - 100; Plants - 207; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR