1. Home
  2. Mutant Lines
  3. 13-4048-1

13-4048-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 596395 [Map]; Strand: w
      • AT1G02730.1 - [+] show detail - cellulose synthase-like D5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-4048-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGTT 
    GACATCAGGC TACCAATGCT GGTCTATGTG TCGAGAGAGA AGCGTCCGGG 
    TTATGACCAC AACAAGAAAG CAGGAGCCAT GAATGCTTTG GTTAGAACCA 
    GCGCAATTAT GTCTAATGGC CCATTCATCC TCAATCTTGA TTGTGACCAC 
    TACATCTACA ACTCTATGGC TTTGAGAGAA GGAATGTGCT TCATGCTTGA 
    TCGTGGTGGC GATAGAATCT GCTATGTTCA GTTCCCTCAG AGGTTTGAAG 
    GTATTGACCC AAATGATCGT TATGCAAACC ACAACACTGT CTTCTTTGAT 
    GTTAGTATGA GAGCTTTGGA TGGACTTCAA GGTCCAATGT ATGTGGGAAC 
    TGGCTGCATC TTTCGGAGAA CAGCTCTTTA TGGATTTAGC CCGCCAAGAG 
    CAACTGAACA TCATGGCTGG CTTGGAAGAA GAAAAGTCAA GATATCGCTG 
    AGGAGACCAA AAGCCATGAT GAAGAAAGAC GATGAAGTTT CTTTGCCTAT 
    AAATGGAGAA TACAANCGAA GAAGAGAATG ATGATGGAGA TATTGAATCT 
    CTGCTTCTCC CAAAGAGATT TGGTACCTCA AACTCTTTCG TTGCTTCAAT 
    CCCAGTTGCT GAATACCAAN GGAGACTCAT ACAAGACTTG CAANGGCNAA 
    AGGCAAGAAC AGTAGACCAN CCTGNCTCAC TTGCTGGCCC ACGTGAACCA 
    CTTTGNTGCA AGCCACTGTN GCTGAANCCA NCCGTNGTGA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 596465 [Map]; Strand: w
      • AT1G02730.1 - [+] show detail - cellulose synthase-like D5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-4048-1 - 5-prime edge 
    TGTCAACGTC TGTTGTATCA ATTAAGTTCT CAGCATCTGC TTCAGCTCCA 
    TAAACTGGTT CTGCATTTGG AGGAGCCAAC ATTGCCTGCA GCAACACACA 
    AAATATTAGA ACTCTCTTTT CAATACAAAC CTGAAATTAG TTAGACAATT 
    AGCAAACAAT TTTGACAAAA GAAGTTACCT GAATGATTCC AGCATGATCT 
    CCTCGAGAGT TATCGGTTTC TCCAGAGGAC CAAGTCCCTG GCCAGTGAGA 
    ACCATCTGAC ATCCAAGTGG CCTTTGGAAC TATAACAGTT TCTTGTGGAT 
    TGTTTCCCAT CATCATTTCC ATCTGTTTCT TCTTAGCCCT TAGCTCTTCG 
    TGCACGTTAT AAGCATCAGA CCTTCTCCTT ATCGCTTCAG GCAATGAGTT 
    GATTCTGACC TTAAACTCAT CATATTCTCT CTTCACTCTC CTCCTTTCCC 
    TCACAAAATC CAGCCTGACT TTGTTCTTGA GAAAGTTACG CTTCTGTCCA 
    AAGTAGGCCT CAGGGTTCCT TGGCTCTATA TTGTGTTTCC TGCAAAATGG 
    CACCCATGTA CTTGCAAAGC TAGCTGTTTG AGCCAAGGCT TCAAATGTTA 
    GCAAAGCTCC TCCATCGTCT GACAAGTAGC AAGCAAGGTT TCTCCACAGG 
    GTAATCAACA GCAAGGATCG AGAGAATGGT GTTGGCTGGG ACCAGAAGGT 
    GGTTCTTTCT NAGG

AT1G02730.1

Model type
Protein coding
Short Description
cellulose synthase-like D5
Curator Summary
Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.
Computational Description
cellulose synthase-like D5 (CSLD5); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3375 Blast hits to 3003 proteins in 709 species: Archae - 13; Bacteria - 1269; Metazoa - 102; Fungi - 19; Plants - 1879; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink).
Link
InterPro Scan - TAIR