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13-4148-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23543562 [Map]; Strand: c
      • AT5G58170.1 - [+] show detail - SHV3-like 5
        Distance: -217; Region: promoter
      • AT5G58180.1 - [+] show detail - Synaptobrevin family protein
        Distance: -449; Region: promoter
      • AT5G58180.2 - [+] show detail - Synaptobrevin family protein
        Distance: -449; Region: promoter
    Flanking Genome Sequence: 13-4148-1 - 5-prime edge 
    CTTTCAGGGT TAGGCCATAT AGAAAAAAAA AAATTAAAAT TTTATTTATT 
    AATATANCNA AATTATTTTN AATATTNGTN CGGGTNNCTA ATTNATNTNC 
    CGTAAGNGAA AAANGGNGGA TNTNTTTNAG TATATNTTTT TTNNATCCGT 
    CANGGNCNNA ANNANCAACA AAACCCCGGT AANANAAAAN GGANANATAA 
    AANTNGGGGG GGATNANTNG TTNNANCCNT AAANGGGANG GCCAAGTTTN 
    TTTNTTNCTN TNAATNANCN ANCTNGTTTT TNTTNNTTCC AATTTNNAAN 
    CCCCTTTTTT TTTTGGCCCC AANCTNCCAN CCCGGGCCGT NAACCNCCCN 
    NGCCCTNTA

AT5G58170.1

Model type
Protein coding
Short Description
SHV3-like 5
Computational Description
SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58180.1

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1); Has 1250 Blast hits to 1250 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 351; Fungi - 294; Plants - 343; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58180.2

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1).
Link
InterPro Scan - TAIR