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13-4201-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3713766 [Map]; Strand: w
      • AT1G11112.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -31; Region: promoter
    Flanking Genome Sequence: 13-4201-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TAACGAATCA ATATTCCTTT TTTTCTTTCT 
    TACAATTAAC ATTCTTTTTT TTATATACTT CAAAAATATA AATAAATTCA 
    AAAACCTTTA GAGATTTTGA AATGAATTTA TCTAAGAAAA TCAAAAATTT 
    GACAAATAAA ATCGGATATA CTACAATTTC GTTGGTTGTT GAGATTTTGT 
    TTTTGTTTTT ACTGTTTCTA GGAATAATAA TGCTAAATTT TACTTGTTTA 
    TTTTGAGATT TTTAAAAAAA AANGTCAAAT AGTAAAAGAG NGATNGATNG 
    NGTNGTAGTT TTNGGNCAAT ACAAANGTTT AAAAGTNGGA TTAGGGCTTA 
    ATACTGTNCT NGTCGAGACT TAANACNGTN CAAGNGCATT AAGNGACTAT 
    TANATAAAAA TCTCATAGCA NCTATCCAAA CAATATGTCA TTATGNGGAT 
    CTCAAATTCC GGGGGGNAAT TTTAAATCGA AGATGAAAGA ATCGGAGATT 
    AAACCTTTCG TNGANTANCA AAAAAAAAAA CCNANNGNGG GGGGNAGGGG 
    GGNAAAGNAA TNNNNNTTNC CGGGNNCCNT TTCTTTTGGG GTTTANNCCC 
    CCNNCCCNNN NAAANCGGGN NNGGGNAAGG NNNNNNNNGN GNNNNNNNNT 
    TNCNNCNNNN CNNNNNGGGG GNNNNGGNNG GGGGGNGNNN CNCNNNNNNN 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20306538 [Map]; Strand: c
      • AT1G54390.3 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon3 (CDS)
      • AT1G54390.1 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon3 (CDS)
      • AT1G54390.2 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon3 (CDS)
      • AT1G54390.4 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon3 (CDS)
      • AT1G54390.5 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon2 (CDS)
      • AT1G54390.6 - [+] show detail - PHD finger protein-related
        Distance: 0; Region: exon3 (5UTR)
    Flanking Genome Sequence: 13-4201-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTCA 
    AGACCACCAT TATTGTAATG ATTACCATTA CCCTTTTTAG AACTCTGTGA 
    AGCAAGCCCT AAGCAATACT TAGTTTGCTG TCTTGTCTGA TTTATAAGCG 
    CTTCCAACGA CAAACAAAAC ACAAACATAA TCAATTCACN GAAACACACA 
    AAGAAACATA CGCAAGAGAA CAATGTAATA ACAAAAATTT ACATTGAGAT 
    CTCTCGTCTA GTTCGCGAAC TGTGTTTAGT AATCTTTGTA GCTCTGCAGG 
    GAAAGTGCTT GCATCTACAT GAAATTGAAT TTCCGAATTG TACAATTAAA 
    ACCCTAAAAT TCGAACTAAT TAGAGAAAAT TTATCAAATA AAGAGAGAAA 
    TTATGGATCT TACACTCAAG GTAATCATCA ACATAAACTC CAGTTCGTGC 
    AATAGCCATC TTTGATCTCT GATGAACTGG ATTTGATTAT GGAGCATAGA 
    CTTCAGCTAG GATTTCGAAT TGGGGATTGA GAACGAAGCT

AT1G11112.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.1

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 1029 Blast hits to 893 proteins in 166 species: Archae - 2; Bacteria - 0; Metazoa - 705; Fungi - 173; Plants - 97; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.2

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.3

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.4

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.5

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G54390.6

Model type
Protein coding
Short Description
PHD finger protein-related
Curator Summary
ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
Computational Description
INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 1316 Blast hits to 1312 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 731; Fungi - 422; Plants - 94; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link
InterPro Scan - TAIR