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13-4228-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17875647 [Map]; Strand: w
      • AT4G38060.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -844; Region: promoter
      • AT4G38060.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -843; Region: promoter
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -888; Region: promoter
    Flanking Genome Sequence: 13-4228-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA AAATGATAAG TTATCGGCGT GTGTGGATAA 
    GTATTAAGTA TTACAATCGT CGTATACCTT ATTGTTATAG TTTTTACCTG 
    TTTTAGATAA TAACATGATT CGATTTTGTA TAAAACGTTA CACTAAATGA 
    ACCCAAAAAA AAANCCAAAA AANANCTNGC AANCAAAAAT NGGTTTNGNN 
    TTANTAGGAN ATATTCTCTC ANTACANAAC GTNGACNNNN GTNTNTAAAA 
    ANAAAANNCN TGNGCCCNGT AANCGTANCA ATCCTTCACA NGTTTNTTAA 
    TAANANCGGG GAAGTNGCAG NANCNTCNTN TNGCCCNCAA NTTTTNNTCA 
    ANGACGNNAT TGCTATTNCC CATANTAAAA TCAATNTAAA AAANTAAAAT 
    CACTTCCNNN ACAATTTTTT TNGGCCCCNT NNGGTAAAAA AATAAAAAAA 
    GGGGGNCTAA NCTAAAAANG GNCCGGGNTT NNCAAAANGG CCCANAAGNT 
    GNACCGGAAG TNATTNANGG GGGTTAACTN NGNNCNCCGT TCGGAACTTT 
    AAAAATTAAA AATCTTTGGC CCTTTNTTTN NNAANGGCTC CTTACAANGG 
    GNNAANTTTT NNTCTCNTCC AAAATTNCCN CTTTCTTTAN NCCCGGAAAA 
    ATTTTAANAN ACCGNNGNTT CNTTNANGGA AATTAANGGT NNGAAAANNA 
    GGGGTCNNNA NTAGGGANCN NGGTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17875834 [Map]; Strand: w
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -701; Region: promoter
    Flanking Genome Sequence: 13-4228-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGTGAAACGG TCGGGAAACT AGCTCTACCG TTTCCGTTTC CGTTTACCGT 
    TTTGTATATC CCGTTTCCGT TCCGTTTTCG TTTTTTACCT CGGGTTCGAA 
    ATCGATCGGG ATAAAACTAA CAAAATCGGT TATACGATAA CNGGTCGGTA 
    CNGGGATTTT CCCATACAAA ATCGGCGATA AGTTGGACAA TACTTTTATC 
    ATTCGTAACG ACCAAGTAAA CATATAATTT AAATCTCTTC ACAAATCCTA 
    TGATATGAAT ATATGAGTTT TTGTCAACGA ATTATAAACA TCTTAATTTT 
    GTGTTTTGTT GTATTAAACT ATTCACACAA TCCATCAAAG TCAACAACAA 
    CAAAACATGC TTTATTCCGA ATCTTATAAG TTGATAATAT AGATAATAGA 
    TTCCCCGGAC AAGTTAAACT AGATTCAGTT TGATAAGACT AATTCCCACG 
    TTATTACGAT GAAGCAAAAG CCAAATCAAA TTGTGTGGTC AACTCAAAAT 
    CAATCTTTTT GTTAAAGAAG GATATTATCA AAACAAAAAT TAACCAACAC 
    TATTTCTAGA ACATTCATGA AAGTATTATC TCCGTATAGG CTATAATTAA 
    ATTATAAAGT CTTTCTTATC TCTAAATCAT AAGATTTCCC TAGTAATCTC 
    CACGAGCTAA AGTCAGAAGA ACCCAAGGCA GATGAGTATG CCACGGTGGT 
    ACATAACTTG AGCCTCATAC ACACCCAAAA CG

AT4G38060.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38060.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38070.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink).
Link
InterPro Scan - TAIR