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13-4261-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1558909 [Map]; Strand: w
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-4261-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAA 
    GAGAATGCAG AGGAATTTTT GGTTTCTTTT ATCTATGCTT CAAACTATGT 
    GGATGAGAGG CGGGAACTTT GGGAAGACTT GAGAAATCAT TACAATATGC 
    CAATGTTCCG TACCAAAAGT TGGATGATTC TTGGTGATTT TAATGAAATT 
    CTGGAGGGGG AGGAGCATTC AAATTTTGTT ACTTCACCTT TTATTCCGCA 
    GGGTATGCGA GACTTCCAAG AAGTCGTTAG AGACTGCTCT CTAGCTGATA 
    TGAGCTATCA TGGTCCGGTG TTTACTTGGT CAAATAAGAG AGAAGAGGGG 
    CTAATAAATA AAAAGTTGGA CAGAGTTCTT GTTAATGAAG AATGGAATCG 
    TAAATTTCCT GCGGCTTATG GCACTTTTGA AGCAGGAGGG TGCTCGGATC 
    ATTTGCGGTG TAGAGTAACG TTGGCCTCTG CAACTCCGAT ACCAAAAGGT 
    CCTTTCAAGT TTAATAATGT CCTCACCACA ATGCCTGAGT TTTTGCAAAC 
    TGTCCAAGAC TTTTGGGCTG GTACTCCCGT GCTTTATCAT TCAACCTCTG 
    CTATGTTTCN ATTTTCNAAA AAGCTAAAGA GTCTAAAGCC TATTCTCAAG 
    TCTCTAGGTC GAAATAAGCT ACCANCCCNG GCCGNNNACC ACNCNTNCCC

AT3G05410.2

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05415.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR