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13-4433-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3753338 [Map]; Strand: w
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: -558; Region: promoter
      • AT1G11200.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: -27; Region: promoter
    Flanking Genome Sequence: 13-4433-1 - 5-prime edge 
    GTCGCAGAGA GGACTCNGCT GATTTTGAAC CGGTCAATGA TGAACAGATT 
    CTGGTCAAAA AAACAATTCT TTTAATCAAA CAAATCTATA CCATTGATGA 
    ATCGTACAAT AACAAACAAC TCGGTGAAGT TCTCTACCTG AATCGTCTTC 
    TTCGATAATC TCCCTCTTGT TTCAATCAAG GTTTGCCTTC TGATTCTCTC 
    TACTTCTTCT TCTTGTTCAT CTCTTAAGTN CAGTATCACA AAAAGTTTCG 
    ATTTTGATGA TCCTGAAGAG CTTGAAAGTA ATGGGTTTTC GGCGTATAGT 
    TACTCCTTTT AGCCCCATTT TGCTGTGTCT TAGTTAAATT TGGAATCTTT 
    TAGCTCGTTC GTCAATGATT TGATTCTGGG GTTTCTAGAG TATAAGATCT 
    GTGACTTAGA CAAAGAAAGT ATGTCAAAGT AGTGAGGTTA CTATTTAAGT 
    ACTGGGAATT TCTGAATTAG TATCTATATC TCAGGAATCA TGATGTTTTA 
    GTTCTATTCA GTCTAGAAAC ACTTCATAAT TGTGCTAGCT GCTACATCTG 
    ATTGGAATT

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11200.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF300)
Computational Description
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G21570.1); Has 839 Blast hits to 837 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 195; Plants - 241; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR