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13-4469-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19218602 [Map]; Strand: c
      • AT5G47370.1 - [+] show detail - Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
        Distance: -693; Region: promoter
    Flanking Genome Sequence: 13-4469-1 - 5-prime edge 
    TATTTATGTG AACATATTCA TCTCACACGT ATATCATTGG TTCATAACCG 
    TTGGTTGGTC CACAACTTTG AACAAGTTCA GATTCTTTTT GATTGTGTTT 
    TGTACCAGCC ACTCCAATTA GTCAATATTC CATTATATCC AACCTCAAAT 
    ACTATTTTCC CTTTTCTCTT TAAAAAATAT TTGGACAAAT AATTGGCTAC 
    ACTATTGGAG ATTTGACTCA GCTCGGTATG CCGTAACTAA TCAAGATACT 
    ATTTTCTATA CTTTCTTTTA TTGATATCCA CATAATACAT GTACTTTGAG 
    TATAATGACG TGTACTTGAT TAAGACAAAA CGAAGTACGA GAATTATTGT 
    ATTTATCAAC TTTGAGACAT ACTACATGAT ATGGATCATG AAAATTAACA 
    CAAGTAGTGC AAATTGCGTT ATCCATATAC AAAAAACATC GCACCTTGAT 
    GATTCACTTA ATTGTAGATT ACTTTCTCAG AGTGGTCCGG ACATTTCTAT 
    TGGTTTTAAA GACATTGGCT TTAAATCTTC AGACACAAAA CACATATACA 
    TGTGTACACT TGAAAACATA TTGGCCATCT TATTTGTTTT GGACAAACTG 
    CCATCTTATT ATGCATGGGT TCTTGTAAGG AATAAACTAA AAATGTTTGT 
    GAAAGAAAAA GAAAAACACA AATTTTGAGA AAGTACAAAA AGAAAGACT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19218716 [Map]; Strand: c
      • AT5G47370.1 - [+] show detail - Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
        Distance: -807; Region: promoter
    Flanking Genome Sequence: 13-4469-1 - 3-prime edge 
    CGTACNTATC ATCCNTCNTG GTCTTNTACT TTCATCAACA NTGACATTTT 
    ANAGCTACTA CTTTTTTTCG TTTCTTCCGT CAGTAAAACC TTTAAATGTT 
    NGTGCTTTTT CCTTTAGAAA TAAAAATNTA AATGTGAGCA ATATAGGNCA 
    AGTGTGTGTA AATATATAAC CACTTTGCGT ACAGTAACAT GGAGATAGGA 
    GCATGTGGGT CATAACAGCG TGATCGTGCG TGTTGTGTTG TTTCCTCACT 
    CGCCTGCTCC TTATCATGTG TAACCATCCG CCTCAATCAA TGCTAACTTG 
    NNAATTATTT GATTCCTTTA ACTGCTGCCT ACTTTTTTAT TGNCTAATAT 
    TCCTTTCTTT TCACAAAAAC TAGTTGTANA CTAACTTCAG NTTGTTGTAA 
    ATAGTTNGTC TTACAANTGC CTGAAGCATG TAAAACCTTA ATCGTATCTA 
    GTAAACGTAC TANTGATCGA NGCATATTCN TAATTCACAA TCCAANTAAA 
    AGTGTCNTTA NGTGTNTATN CTAAACAAAN NTAAAAANTG ATGNTTTGNA 
    TNCTCNTNCG NTAAATANAA TCTCANGGCG AATTCTANAA AAAAANTAAC 
    ANTTTAACTG TANTANCGCN GAANTCAANT TNAATNTTTT NCCGCCATNN 
    NGANANCNAT GNTCTTTNCT CGAAATTCGT GAATATANNC NGCNACTGAG 
    CNACCANTNC TNGAACANNA ANNANATTGG NNTNNAGNGG GTNAGAAAAA 
    NT

AT5G47370.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Curator Summary
homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.
Computational Description
HAT2; FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, auxin mediated signaling pathway, shade avoidance, regulation of transcription, DNA-dependent, unidimensional cell growth; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HD-ZIP protein, N-terminal (InterPro:IPR006712), Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT4G17460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR