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13-4587-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19609235 [Map]; Strand: w
      • AT2G47890.1 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon3 (CDS)
      • AT2G47890.2 - [+] show detail - B-box type zinc finger protein with CCT domain
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 13-4587-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GAGATGACAC ATGAGATCAA CAGTCTTGAG 
    AGGAACTCTG CTCTCTCTCG CTACAAAGAA AAGAAGAAGT CTCGAAGGTA 
    AACAAGCTAA TTTTAAAAGT GAGACACCAC CAATAGGATT GGGATTTGAA 
    TCATGTGTTG ATGAAACAGG TACGAGAAAC ACATCAGGTA TGAATCACGC 
    AAGGTTCGTG CAGAAAGCAG GACAAGAATC AGGGGACGTT TCGCCAAGGC 
    AGCAGATCCA TGAAAGATGA TGAGGTTACT TTGATAATCA AAAATCTTTT 
    GTATTAATCG AATCATATAG TGTGTATGAT CAGATAAGTT TTTGTATTCT 
    AAGCT

AT2G47890.1

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 3246 Blast hits to 2264 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3153; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47890.2

Model type
Protein coding
Short Description
B-box type zinc finger protein with CCT domain
Computational Description
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR