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13-4595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3750516 [Map]; Strand: w
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 13-4595-1 - 5-prime edge 
    ACCTTGTATT GAAATATTCT TCTGCAAAAT TATTTATCGG AAATTATTAA 
    ACAAATCCTT TAGCTTTCTT ATAAAATTAT ATATTAGACA GTCATATATC 
    CCACACAAAA AAAGTAGTGA CTATTAAAAA TCATTAATCC GATTAATTAA 
    ACTTCATTTG GTCGGGTTTA TTTTTAAATA TTTTTGTTAG CGTACGAGAA 
    AAAGAAGAAG CAAACAACGT ACCTGATAAC GTTTCACCAG ACTTGACGCC 
    TTTGTATCCC CATTTACAAG CTAACTTTAT ACTCTCTGAA GCATACCTGC 
    GTATACAATT AAAATTAGTT CAATATTTTA TATAATGTTA TTCGAAATTG 
    GATATTTTCT CCACCCAAAC AAAACCTACT TAAGAATCTA TAATTATGAT 
    GTTAATATTT TAGTTTTCAG TTGTAAACTT AATAAGATTC TGATCATGAA 
    TACACTACAT ATATCGAAAC ACAAAAGGTT CGAGTCTAAT TATGTTTCAT 
    AAGAAATCTC ACATCGGAAA TAAGATGTGA TATAAGGTAA TATATATGGT 
    ACATTAGTCA ACCCACTAAT CATGGTAAAC TACTATTAAT TGACTTTGAA 
    TTGGAAGTTA GTGAAACTTA ATCCTATCCA ACTCCAAATA AATTAAAAGT 
    TTAAAACCTA TTATTTNATT TTCAGTATCT TTGNAAGATT TTTGGACCAA 
    AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3750400 [Map]; Strand: w
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 13-4595-1 - 3-prime edge 
    TACAAGGTTG CCAATAGTGA TGAAGAGAAT AGTTCAGGGA GGAGTTAGAC 
    TAGCCATGAT ACTAAACCGG GTTTTTAGTG ACGATCATGC TATTGCTGGT 
    GTTGCTGCCA CTTGAACCAA ACCCGACATA CCGGGGCATC AAAGCATTTG 
    ATTAAGAGAT TATTTGATAC ATTCACAAAA TTAATTAAGG CTGATCAGAC 
    ATTCTTTTCT TTTAGTAGCT TTATCTATGT GACAGCTAAT GCCTGTGGAC 
    TGCTTTGTTT AGAAGTGTTT AGCATTAGAT CATATGCTAA TTCAATGTTA 
    TTAATTCATC GTATGATCGT TTTAGAGATA GTGGTTCTAA GAAAATAAAC 
    TAGATTATTT CATTCAAGTA AACCTAGTTC ATCTATAAAT ATTTGATTCC 
    AGTCTAAGAC AAATGAGACC AAAAGCTAAA TATTATAGAT CAAATTGATA 
    AAGTAAATAA GAAATCTAGC ATCTAGAAAG ATCACAATAT ATATATTTTA 
    ACAAGAGAAA CTACATAGGA TTTGTACAAA AATGAAATGA CAAAATGAAA 
    TTGAACTCAA CAAACTANAC ACTACAAGAT CACCAATCTT ATCTCACTCC 
    NNTAAACCNC AGAAAATTCT AAAAAGTGAA TGAAAATATT TCTGTGCGAA 
    ATGAGAAGAT AGAAGATTAA GTTTAGGATC ACCANCCCGG GCCGCNACCC 
    CCTNCCCCTN TANNNNNA

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR