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13-4639-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5072612 [Map]; Strand: c
      • AT2G12480.1 - [+] show detail - serine carboxypeptidase-like 43
        Distance: -79; Region: promoter
      • AT2G12480.2 - [+] show detail - serine carboxypeptidase-like 43
        Distance: -79; Region: promoter
    Flanking Genome Sequence: 13-4639-1 - 5-prime edge
    CAAGGAAGGG CTTCTGAGAA TTTGCTCCTC ACGTGCTTCT TGCCTAAAAC 
    GGAACTGTGT CGTTTTAGAT CAAGTTCTAG TGTTAGAACA CTTGAGGAAA
    ACTTGGGAAC AAAGATCACT AGATTCGTGT CTTCTTGTTG TACAAGCCTA
    TGATAGAACC TGATTCTAGA CTTATAGTGG GTTCTTGCTC ATTTACGTTC
    TCTGCAATTC TCTGTTTCTT GTTCTGTTTT CAAGTCCTCT TCAAAGTTCT
    TTACAAACGA GTGCTAATCG AAAAGAGATA GTGAGTTTTA TAAACTCTAT
    ACCTCACACT GAATAATTTG GATTCTGAAT GTTTTTTTTG AGTCTTTGAA
    ATTGTTCTGT TTATTGGTAT AATTTCAGTG AAGTATTAAA GATTCAGTGA
    GATTGACGTT AACTTATAAC TTGTTGTTGC TTTTGTATTT TGACATGTTT
    CANAACATGG TATCGTCTCG GGCCGTTGTG ATGGCCATTA TGGTATTGGT
    CACAGTGCAG TGGTTGGTTT TTGCTGAAGG TTATCCGGAA GAAGACTTGG
    TGGCCAGGCT ACCTGGTCAA CCAAACGTCG GGTTCAGACA ATTTGCTGGA
    TATGTCGATG TGGACTCGGC AAATGGTCGT AGTCTTTTTT ACTACTACGT
    GGAGGCTGTA AAAGAACCTG ACACTAAGCC CTTAACCCTT TGGCTCAATG
    GAGGTCTCTG
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5072728 [Map]; Strand: c
      • AT2G12480.1 - [+] show detail - serine carboxypeptidase-like 43
        Distance: -195; Region: promoter
      • AT2G12480.2 - [+] show detail - serine carboxypeptidase-like 43
        Distance: -195; Region: promoter
    Flanking Genome Sequence: 13-4639-1 - 3-prime edge
    CTTCCTTGTA AAACGGTAGT CCAATTTATA TTGTGATTAG TAACAGTATC 
    ATTAAATATT TTTCTTTCTC AGGCTTATAT TTTCTGATCT CTTAGTAATC
    TATTTGAGTA CAACTTGAAT ACAACTGCAT ACGATTCTGA ATTTTTGTAT
    GTTGAAATCA GTTACTTTTT CTCGATTTTG TGTAGAATT

AT2G12480.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 43
Computational Description
serine carboxypeptidase-like 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 42 (TAIR:AT5G42240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G12480.2

Model type
Protein coding
Short Description
serine carboxypeptidase-like 43
Computational Description
serine carboxypeptidase-like 43 (SCPL43); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 42 (TAIR:AT5G42240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR