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Mutant Lines
13-4753-1

13-4753-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 135469 [Map]; Strand: c
  - AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
    Distance: -147; Region: promoter
  - AT1G01340.2 - [+] show detail - cyclic nucleotide gated channel 10
    Distance: 0; Region: intron1 (5UTR)
  - AT1G01350.1 - [+] show detail - Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
    Distance: -655; Region: promoter
Flanking Genome Sequence: 13-4753-1 - 5-prime edge
```
GTTGTTCGTG TGGTTTCCAT TTATTGAGCA GGAATGGGTA GGAATTACAG 
GATTTGGTAT AATCTAATGT TAGGTGGAAA TTGACTGATT CTAGGTTCTC 
TAATTAACCT TTTCAAGAAA GAAATATTTA AAAACACATA CACACAACAC 
AATTGTATTT GTAGTTAGGT GTCTACTTGC TTATTTTTAA TTGGTATTGG 
GGATTATCAT TGTACGTAAT CATGTAGAAN AATT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 135531 [Map]; Strand: c
- AT1G01340.1 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: -209; Region: promoter
- AT1G01340.2 - [+] show detail - cyclic nucleotide gated channel 10
  Distance: 0; Region: intron1 (5UTR)
- AT1G01350.1 - [+] show detail - Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
  Distance: -593; Region: promoter

AAAANNNNTT NAAAAAAANG AAACGGTNGN AGTNTTTTAC CGACCGTTAC 
CGACCGTTTT CATTAAAAAC ACTGTTCATC AAAGATAAGA AATCCAAATT 
TCAAAAAAAC ATTGACCATA AACGAAAGAC ATATATCTAA GCGTTTCGGT 
TCTGAGAAAC AGCAAAATAA ATTCAGACGA AAAAGAACAA AAACNGGAAA 
TCGGAATCAA AATTCTATCA TCAAACTAAC CTGAAACGAA GTAGGTAACG 
GCGAGATAGT AAGATTCGGC TAATAAACGG AAGTCGGTGA ACGGCGTTTT 
CTTCAATTCA AGCAACTGGT CCCGTCGTCG CTGGAAAGAG AGAGAGACTC 
ATATGGCGGT TACTTGTATC TCTCTCTGTA TATTGTTTCC TGGAAAAGTA 
GTATATGAGA ATTTTATTAT ACGACAAAAA GGGAGGGAAA GAGGAATATT 
ATGCAATTAA ATATTATAAA GTCTGTTCAA TTGAAAATCA TTTCATAAAA 
CAATTTCATT CAGATGAATG ACTTGGTCAA AGTCAGACGG CGAGAATAAG 
CAAGTTGCCA AATTTTGAAG TACCGGGCCC ATTATGAATA TTGAGCCCAT 
TTAGATTCAT GACCCAAAAT GAAGTAACCG CCCCACCATA TGTTCCTTAT 
TTCTTTTCTC TCTCTTCACA CTGATTTATT TTCTGTCGGA AAATACGGAC 
GGNGTCGTCG TTCTTCTTGA CGGTGTAGCT CACCGGCGAC NATTTTTTAN 
ATTTTTTTTT AAAGGGAACA TATTCTTCCT TGGNTTAATC TCCATNCT

AT1G01340.1

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1); Has 3364 Blast hits to 3209 proteins in 253 species: Archae - 0; Bacteria - 35; Metazoa - 1554; Fungi - 48; Plants - 1027; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G01340.2

Model type: Protein coding
Short Description: cyclic nucleotide gated channel 10
Curator Summary: member of Cyclic nucleotide gated channel family
Computational Description: cyclic nucleotide gated channel 10 (CNGC10); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Ion transport (InterPro:IPR005821), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 13 (TAIR:AT4G01010.1).
Link: InterPro Scan - TAIR

AT1G01350.1

Model type: Protein coding
Short Description: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Computational Description: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT5G06420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR