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13-4810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19512491 [Map]; Strand: w
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4810-1 - 5-prime edge 
    CTAATACGGN CGGCGAATGC GACGGTTGTG ACGACTGGAA TAACCANCNG 
    GCAGTNCGCG TGTGGAAGCA GAGGATCATA CTNACGGCGN ACGAATAGAA 
    CNGATNACGG AGGAGAGCAT GATTTTGCCN NAGAGAGCNG TAGCCTGAAG 
    ACGTGTGGCT CACGCNTNNC NCAAATAGGC TNGTGTGCCT TTCTTCACCG 
    ATTNCCATAA TACTAAAGAG NGACTGGANN TCTTTNAGAA CCNGGANNGA 
    GAANCGGAGA GCCNTAATCA AAATGGTTTA ATGGGCAGAA GAAGACNGNN 
    GGACAGNATC NTATAANANA AGTGTTNGNN GNTTNAGANC TCNNNNGCTG 
    NATNAATNAG CGAATATNTG NNTNATGTTA ANANTTTAAC CATTGGGGTN 
    NCTNGACTGA TNTATNTTTA TTNTCGCNAN AGTNNANCTT ANCCCCACCN 
    NTAGTNAATA AAAACCCNTN TTNNNGNAGA NNTANAGNAA TATGNGATAT 
    NGCCNNANNG AGNNNNTNTN NGGAAAAAGN NANNTNGNNN GCNCNTNAAN 
    GATNTNCTGG AANGANATTG ANANGCNANA NANAAANTNT AGCNNNANNN 
    TNNNAGCACC GGTNGGGANN NNNNGCGNTG NNNAGANNTN NANTTACNNN 
    GNCNNNAATA NCANAGAANG AGGNAANANA ANNNTNGGGN NANAGAAAAG 
    ACNGGACNNN NATCCNANCT ATNNCNNAGT TTGNGATNNA AGNAANCNCA 
    TNANANAGAN AN

AT2G47560.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Link
InterPro Scan - TAIR