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13-4938-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20685489 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -1436; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -6158; Region: intergenic
    Flanking Genome Sequence: 13-4938-1 - 5-prime edge 
    GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCCCACA GAAAGGTCCC GGAAACAGAA AGCATAAATT 
    GCCTCACCGT CGTTGTCAAT TTTGTCGTCA CTGAGACTGC GTCTACTAGA 
    CGTCTCCATC ACACAGTCGT GTTCATTTTC CTCGTGATAT ACCACNGAGG 
    TACGTCATGA CTTATATCAA GGGTATTAAG TGTGAGTGGT TTGGAAGGCT 
    GATTATGATT AAGTAGTATT TAAAATTTGA TGGTGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20686732 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -2679; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -4915; Region: intergenic
    Flanking Genome Sequence: 13-4938-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAACTT 
    CTTAAAAATA AAACGATTAA ATAATATAGT TTGGATATAA TCTTTTGCTT 
    AACATTTTTT TGTTTTCATT ATTATCCATA CTTTTGTAAT TTTAGTTTGG 
    GATTGTTCAT TATTGTGAAC GAAAGTTACG TAATATATAC AAGTCATTTG 
    TTGAAATTAG ACCTAAGAGA AAACGACACT AGCATGAGTC ATACATACTC 
    TTGCCCTGAA ATTAGGATAT GGAATTGGGA AAGACAACGA CATTGTCTTC 
    TATTTATTGG ACACTAAGTT AATGTTGCCA CGTGCCATTA ATACCTTCTT 
    ATCAACTCTT GACACTTGCG TTTAGGTTCG AATCATTTTG AAAAAAGAAG 
    AGTAAATGCT TATTCTAAAT ATATAAGGCG AAATTCCACA ACCAAAATAG 
    ACTGATTATG TAAACTAAGC CTCTACGTGA AGTAATATAT ACTATGTTGA 
    ATCAATCTTG AACCCTGACA TGTTGATATT GTAGCAAAAT TGTGGACTCG 
    TCCACATGGA TTCTCGTGTA AATTATAATA TTATAACTNG ATTATTCATA 
    TAGNAATTAA ACTATTTAAG TTGATATCTT TGTTTGAAAG TAAATAACGN 
    AATGGNCCCC GNNGAATTAC CANCCCGGGC CGNNACCNCC CNGGCCNT

AT3G55730.1

Model type
Protein coding
Short Description
myb domain protein 109
Curator Summary
putative transcription factor MYB109 (MYB109) mRNA,
Computational Description
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55734.1

Model type
miRNA
Short Description
MIR393B; miRNA
Curator Summary
Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in roots in response to nitrate exposure.
Link
InterPro Scan - TAIR