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13-4954-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seedling (PO:0008037)
  • desaturated green (PATO:0001272)
    (Seedling::pale green)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2204842 [Map]; Strand: w
      • AT1G07180.1 - [+] show detail - alternative NAD(P)H dehydrogenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4954-1 - 5-prime edge 
    GGTACGCTTG AGTTTAGGTC TGTTGCTGAA CCAATCTCTC GTATCCAACC 
    GGCGATTTCA CGAGAACCCG GTTCTTATTA CTTCCTTGCT AATTGCTCCA 
    AACTTGATGC TTGATAATCA TGAGGTAATT GCTAATTGGA TATTAATATT 
    GGTGAAGTTC TTGAAATTGA GGAAAAGTCT TGCAGATGTA TCTATTTTTT 
    TAGTTTTCTG TTTGGATTTT TCTACAATTT GTGGATGTAG AAGTAGTTTC 
    GTTTAGACAT TGTTTCAAAC GCTAATTTTG CGTTCACATT TAGGTATATC 
    AAAATTTCCA AATTGTAAAC GCAAACGCGA CTTTTGTGTT TGTGATGAAA 
    GCAGAGTGCT TTGGACTGTT GTATATGATA TGTGTGAATC ATGCTCTTGG 
    TTTAAACAGG TGCATTGTGA GACTGTAACT GAGGGGTCTA GCACATTGAA 
    GCCATGGAAG TTCAAGATAG CTTATGACAA ACTGGTACTA GCTTGTGGTG 
    CANAAGCATC CACATTTGGA ATTAATGGCG TCTTAAAAAA CGCCATTTTC 
    CTCCGTGAGG TTCACCACGC TCAGGAGATC CCGTAGGAAG CTACCANCCC 
    GGGCCGNCAA CCANCGGNCC NCTNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2204775 [Map]; Strand: w
      • AT1G07180.1 - [+] show detail - alternative NAD(P)H dehydrogenase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-4954-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGNGGCCNTC 
    CNNACCNCCG TCGCGTTGAA GCCAAGAGAG GAGTGAAGAC CATGTGGTTC 
    CTAGGAGAGA CACAAACGAC GTCGTAAATA CTAGTATCGA TCCCTTTTAA 
    TACCCGACAA CCCGCCCAAC CCGACCCGAG AACCAAAACT CTCGGCTTCT 
    CTCCCTCTTT CGTCGGAGCC AAACCGTCGT AACGTTGTGG CTCCAACGCA 
    TTAACTACAT CCTCCTTTGC TTGAACCGTG TCGGTTACTT GTTGCTTTTG 
    CAGAGCGGTG CAGAAACGGG ACGAGAGAGT GTAGGATTCG GGGTTTCTGA 
    ACACGTTTCC GACAGACGAA GAAGTGGTCT GCGAGATTCT TGCTAGGTTT 
    TTGATCCACA ACATGATTCT TTAGGTACTC TTCTTCAATC GAGAGAAGCA 
    AATAATACTC CAAACCTAAT GTGGTTAAGA GAATCGAACA AACTCTGCTA 
    CGAGCCGCCT TTGGTATACT GTATTATTCA CTGTAATACG TATGAGAAAA 
    ACCTACGTGC CANATTAGGA AATGACAGGT GGCACTCTGA TTCTCTTTCA 
    CCCAGAATAA ANGGGAAAAT AACTTCTTGA TTTTCTTTTT TGGNTAGCCC 
    ACAGAAATAT TTAAATGTTT AGAAAAACAT TTTCAGTNGT NTGCNATTGG 
    GTNGGGCGTT TTTTTAAGGT GGGNAAACAA AATNGNGAAT AGGTTNNATG 
    GGGGNTGNNA NAATTTCNAN ATTTNNNNTC NCGNGNNNNN CGN

AT1G07180.1

Model type
Protein coding
Short Description
alternative NAD(P)H dehydrogenase 1
Curator Summary
Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.
Computational Description
alternative NAD(P)H dehydrogenase 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248; Bacteria - 7524; Metazoa - 53; Fungi - 647; Plants - 379; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
Link
InterPro Scan - TAIR