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13-5006-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4537541 [Map]; Strand: w
      • AT1G13250.1 - [+] show detail - galacturonosyltransferase-like 3
        Distance: -7478; Region: intergenic
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: -4627; Region: intergenic
    Flanking Genome Sequence: 13-5006-1 - 5-prime edge 
    CNTNANAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCT ACATACTGTA TATATCTCCT AACGATAATC 
    GTGATGGATA TTAATTAATC TAAAATATAT CTATGCAGAT AAACACTCGC 
    TTTTAAGAAA TTATTTGCTT AACAAATTAG ATATAGCGTT TTTATGATTC 
    GAGGATTTAC NTTTTCTTTA ACCAAACGAA TGTTCCTAAA TACATCACCA 
    ACGAAATGTT ACATACTTAG TTGACTAATC TCGTAAGATA ATGATGTGGA 
    AATCTAAATG AGGATATATA AAGAGCCGTA ATTGTTAACC GATAAGGCGA 
    TAACCACTTG ACATCATCGA AAGTTCGGTT AGTGGAACAA TAAAAGATTA 
    ATTAGATGGT AGCAATCGGA TTTTCACGTT TCTTTATTAT TGCCGCTCAG 
    TACTGTAATT CATGATAGGA CAATGAATCT ATTTATAAAG TAATCAACTA 
    CATTTTCGAT CGAGTGATAA TGTATTTTTA TGTAAATATT TAATAAACTA 
    TAGCTTTTAA TTATTTTAGA TAATTACAGA AATCATTTAA AATATAAGTG 
    TGCGCAAATG AAAAAGTCTA TTAAGAACTT AAAGCATAAT CAAAACAATT 
    AGGTTTACCT TTACAATTAT GTTCATTTTA TATGCCCGNC NTTTCTCTTA 
    CGGTGATTAA TAANTAGGTA AATAACTAAC GACTAAACCA TCAGCATTTA 
    NTGNNCATTA TAAAACCCAT CAA

AT1G13250.1

Model type
Protein coding
Short Description
galacturonosyltransferase-like 3
Curator Summary
Encodes a protein with putative galacturonosyltransferase activity.
Computational Description
galacturonosyltransferase-like 3 (GATL3); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 4 (TAIR:AT3G06260.1); Has 2168 Blast hits to 2160 proteins in 496 species: Archae - 2; Bacteria - 1004; Metazoa - 285; Fungi - 17; Plants - 765; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR