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13-5018-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17920989 [Map]; Strand: c
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5018-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    CCCATCGAAC CAGCAAGAGC GTGATGAGAT CGCCGCTCAC GCTCTCTCTG
    GTCTACCAGA CTTCCACAAA ACACGGTTCA TTGAGCCAGG AGAGAACAGA
    TCAAAGTACT CAATCATAAT CGGCGGCGAA AACTTTGGTT GCGGATC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17920913 [Map]; Strand: c
      • AT2G43100.1 - [+] show detail - isopropylmalate isomerase 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5018-1 - 5-prime edge
    TGTGCAAGCG GCTCCTGCTG GGATGATCTG GTCGGTGTCT ATGTTGTCTT 
    TCAAGACATA GCAGAGGCCG TGGAAGGTTG TGTTGGCTAG GGCTTCGTTA
    GAGTCGGATT CTGAGGCGGC AGCACGTGGG ATGATGGTCG GGGAGGATGT
    GCCACNGTGA AGTGATGGAG ATAGAGGAGG GGATTAAGGA AGTGGAACCA
    TTGAATCTTA AGAAAGGAGA TCGGAAGGTA GCCAAGGAGG AAGAAGTTTT
    GGTTGACGAG CAAGGTAAGG CTTGGGGAAA TGTAGGAAGA GAATACGCCA
    TTGTTTCTTT ACTTTGTTGA GTGAGTGAGA GAGTTCACGA TGAAAACAAT
    TTAAAAGGAG AAATGTTTGT ACCCTNCTAT TTACNAAAGT GCCATTNAAA
    ATTACCAACC CNGGGCCNNA AANANNCNTG CNNNNTNG

AT2G43100.1

Model type
Protein coding
Short Description
isopropylmalate isomerase 2
Computational Description
isopropylmalate isomerase 2 (IPMI2); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8735 Blast hits to 8734 proteins in 2248 species: Archae - 359; Bacteria - 5628; Metazoa - 12; Fungi - 337; Plants - 71; Viruses - 0; Other Eukaryotes - 2328 (source: NCBI BLink).
Link
InterPro Scan - TAIR