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13-5040-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6777610 [Map]; Strand: w
      • AT1G19580.1 - [+] show detail - gamma carbonic anhydrase 1
        Distance: 154; Region: intergenic
      • AT1G19600.1 - [+] show detail - pfkB-like carbohydrate kinase family protein
        Distance: -1378; Region: intergenic
    Flanking Genome Sequence: 13-5040-1 - 5-prime edge 
    CTTGNATCNT GTATACTATT ANNATGATNA GNCTCCTTCC TTTNGNCAAA 
    GGCCNNNNCT TTTCTTGAGA TNNATCTTTC AGTTNTTCTA GCTATCTGGC 
    TGTCAGTGCT TTTANGATTC AAGTATTCAA CCATTNGTTA CAATAATACT 
    AATAATTGGA TTTCTCCCTT GTCACTTTGT AGATC

AT1G19580.1

Model type
Protein coding
Short Description
gamma carbonic anhydrase 1
Curator Summary
Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19600.1

Model type
Protein coding
Short Description
pfkB-like carbohydrate kinase family protein
Computational Description
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: D-ribose catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G27600.1); Has 11746 Blast hits to 11745 proteins in 2087 species: Archae - 257; Bacteria - 7533; Metazoa - 331; Fungi - 90; Plants - 444; Viruses - 0; Other Eukaryotes - 3091 (source: NCBI BLink).
Link
InterPro Scan - TAIR