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13-5162-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 289553 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -3060; Region: intergenic
      • AT2G01660.1 - [+] show detail - plasmodesmata-located protein 6
        Distance: 1050; Region: intergenic
    Flanking Genome Sequence: 13-5162-1 - 3-prime edge 
    TGGTTGTCAG TTGCCTATTT AGCAGAATCC ATGATATTGA CACTGGGACC 
    GGTGCCATTC CCGGATGAGA AGCTGTGATT TCCACCCGCG ATAGCACTAT 
    AACAACTTCC CCTTGGTATC AGCAGTTCTG AATCATCATC GTCATTGTCT 
    TAAGAAGTTC TTTAATATAT TATGTACGAT AGCGTCTACA ATCGCATGTG 
    TAATCTCTAT AGTAGACAAT ACTTTTTTTC TCCTTTAACA TGTTTTGTTG 
    GTGTCGATGT TGAGTCTAAC TATATTCTTT CATTTCTTGG TAATTTTTTT 
    ACTCGATGTT TAAAATCGAA TTTTATTTCA TTTTTACAAT GTAGTTAAAT 
    TAGCCAGTAT GGCTACTTTA ACATTGGATC GAAAACGCAG TGCCACATTA 
    GCCACTAACA CATAATTTTA GCAACTTTTT TTTTTTTTTT AANCNTAANN 
    TTNAAGGGAA CNTTAAAANA AANNGNNNNN NNNANCCNCC CNNAANTGGN 
    TTNNTNAGGG NANCGGCTTT TTTTGGNCCN AAAAAAATTN CANTGGNTTA 
    ANGGGNTNNA AATNCCAAAA NNGGGGNAAN NTTTTNAACN AAGGTTNNTT 
    TNTNTNGAAA AANTTTTTTT TTTTTGGGGC AATTTTTTTT CAAANCANAG 
    GGNAAANAAT TGGGANAANA AAAATTGGGA CCCNTTANCC ANATTNTTTT 
    CCANTTGGGN ATTTTT

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01660.1

Model type
Protein coding
Short Description
plasmodesmata-located protein 6
Curator Summary
Encodes a plasmodesmal protein that may be involved in the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.
Computational Description
plasmodesmata-located protein 6 (PDLP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: plasmodesmata-located protein 7 (TAIR:AT5G37660.2); Has 1458 Blast hits to 1310 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR