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13-5164-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3590754 [Map]; Strand: w
      • AT1G10760.1 - [+] show detail - Pyruvate phosphate dikinase, PEP/pyruvate binding domain
        Distance: 0; Region: exon2 (5UTR)
    Flanking Genome Sequence: 13-5164-1 - 5-prime edge
    TTGATGGACG GTATCTGNGG ACTCCACCTT TTTTTTTNAT TGGGGGGATA 
    TTTTCTNATT ATATACAAAA TCTTCTNACC GTNGATTTAA NCTTTTTTNA
    ATTTTTCTTT CTTTTTTCNA TTTNCCNGTT TTNGNCTTTT NGTTTNNANA
    TTTTNATGCT NCGTNCTCTN GNATCTTTTT TTNATGGGCC AANANGTTTT
    TTTTTTTTTT NNNNNGGGGC CNNAANNCNA AAANNGGAAA AAAANTTTTN
    GNNNNNNTTT TTNTTTTNGG GGGGNANNNN NNCCCNNCCC CCCNNGNAAA
    AANNNGNAAA NNNTTNNCNA ANAAAANCNT NTTGGGGGNT TTNGGGGGGG
    GGNNNNNTTN NAANNNGGNT NACNNNNNGG GGAAAAAAAN ANGGGNGNNA
    AAANAAAAAN CCNNGGANTN TTNNGNANNN GGGCNGGGGG GAAAAAANAN
    GNNNAAATTT TNNNNANCAA AAAAAAAAAA AAAANNNCNN NTNNNTTANN
    CNNNTTNNAA AAANNGNNCN GANNCNNNGG NGCGNANATN ANANNNGNGG
    NNANAAAAAA NNGNGNNNGG GNNNNAGNGA GNNANAGNAN NNNANANAAA
    AAAANGNNNT NNNAAAAAAA AGANAGAAAA NNGNGNTNAN GNGNNANANN
    NNNNNNNCNA NGGGNGNNNG NGAAGNGANT TNCCAAGNAA CATTTTNNNN
    NNNTTATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3590638 [Map]; Strand: w
      • AT1G10760.1 - [+] show detail - Pyruvate phosphate dikinase, PEP/pyruvate binding domain
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 13-5164-1 - 3-prime edge
    TCCATCAACG TATCACTGGG CTCTCTTTCT CCGTGCCGTT CCTCCTACGT 
    GCTCGAATAA CGATGTGCCA CGTGGTGGAA TCGAAGGATA AAGTGTCGTT
    TTTTACTTCG ATTACACGTG AGTGTATGTA TGTGTGAGTG AGTGAAGAAG
    AACAAAGAGC GAAGAAACCC CCCAGCACTC ACTTCATCCA TAAGATCATT
    CAAATTCTGG GATCTTCTCT CTTTCTCTCA TTGTATTCAG TTTCTTCGTC
    TCGGTTCGAT CATCAGGTAT CTTTTTCAAT TGAATTTTAC CTTCAATTTC
    GATTGCTTTC GGTGTTTTTG TTATTTGATT CAAATTGCAA ATTTTCTTTT
    GATAGATATT TTCGTTTTGA CTATAAAAGA CGATTCTTTT CTTCTTAGTG
    TATATTGCAC ATGTTCCATT CGCAGAATGA AGTAACTGTT TCTCTACAAA
    GTGAAAATAA AATAAAAATA ACAAGTGTGG TTCTCTTGTC TAACTCTGTC
    AGATTCTTCT TTTTGAGACA AATAGTATAA CTTGTTCCTT TTTTTTCTCA
    TCTATTGCAA AAGCTACCAN NCCGGGCCGN NNACCANNCN NNCNC

AT1G10760.1

Model type
Protein coding
Short Description
Pyruvate phosphate dikinase, PEP/pyruvate binding domain
Curator Summary
Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.
Computational Description
STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Link
InterPro Scan - TAIR