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13-5191-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108869 [Map]; Strand: w
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -692; Region: promoter
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 13-5191-1 - 5-prime edge 
    ACAAAGTGAA GATAAAGAAA TGATTTTTAA TATAATATAG ATTTAGAGTC 
    TAAAGCATCA ATCTTTGATA ATTAAATTTT TTAACATCAT AATAAGAATT 
    TAATTATCCA AACGATATAA CATTTGTTCT TCAAAGCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3108700 [Map]; Strand: w
      • AT3G10080.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -523; Region: promoter
    Flanking Genome Sequence: 13-5191-1 - 3-prime edge 
    GTTATATCAA AGAAATAAGT CATGTTTCAC ACTCTGCCTA AACCTTTACC 
    ACCGAAAAAA TGATGTTCAT GTGCCTCTCT AATCATGCCT TGGAGATAAC 
    AAAAAGCT

AT3G10080.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G18980.1); Has 1595 Blast hits to 1591 proteins in 125 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 57; Plants - 1448; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR