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13-5215-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 286545 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: -52; Region: promoter
    Flanking Genome Sequence: 13-5215-1 - 3-prime edge 
    GGTCGTCGAA GACTTTTGTG TTTGTTCTGT TTTGCTTCTC TTCGCAATTA 
    AGCCAAAAAA AAAANTGNCC CNGTTGNCCN ANAATTTTGA NTAATGGGCC 
    NTTTGGGCCN AANNATTGNN TTTTNANGGC CCCNNAATTT TGANTAANGG 
    GCCNTTTGGG CCNAANNATT GGNTNTTCAA NGNCCNTAAA NNTNCNTTTT 
    TGCTAAAANC CNTGNAATTN TTAANACCCC CNANNTTNNT TNTTTGGGGA 
    ANCNCANNTT GGCCCNANNA AANNTAANAA ANAANAANCC TTTGCCCTAN 
    ANNNNTAANT TGACNTTNTT TTTTGGNNNT TTNTTTAAAA ANAANANNNT 
    TTAAAANCAA CCCGGGCCNN NNACCNNCCC NGNCCCTNNN AA

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR