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13-5233-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3590587 [Map]; Strand: w
      • AT1G10760.1 - [+] show detail - Pyruvate phosphate dikinase, PEP/pyruvate binding domain
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: 13-5233-1 - 5-prime edge
    CTGGGGGGTT TCTTCGCTCT TTGTTCTTCT TCACTCACTC ACACATACAT 
    ACACTCACGT GTAATCGAAG TAAAAAACGA CACTTTATCC TTCGATTCCA
    CCACGTGGCA CATCGTTATT CGAGCACNGT AGGAGGAACN GGCACGGAGA
    AAGAGAGCCC AGTGATACGT TGATGGACGG TATCTGTGGA CTCCACCTTT
    TTTTTTTATT GGGGGNANAT TTTNTTATNA TATACAAAAT CTTNTNACCG
    TNNATTTAAN CTTTTTTAAA TTTTNCTTTN TTTTTTCTAT TTNCCNGTTT
    TGGCCTTTTN GTTTGNANAT TTTAANGCTN CGTNCTNTNG NATNTTTTTT
    TNATNGGNCA ANANGTTTTT TTTTTTTTTN NTTGGGGNTC CNAANCCNAA
    ANTNGGAAAA AAANTTTTNG GNANTTTTTT TTTTTTNGGG GGNAANNNNN
    TCCNANCCCC CCTNGGNAAA ANNGGNNAAN TTTTTNCCNC NAAANCCNTT
    TTNGGGGTTT TNGGGGGGGG GNTTTTTTTT NNNNNNNTTN NNCCNNNGGG
    NAAAAAAAAA TTNTTTTTTN NTTTTAAAAA AANNNNATTN NNNNNNAAAA
    NNNNNNNGGN NNNNANAAAA NAAAAATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3590519 [Map]; Strand: w
      • AT1G10760.1 - [+] show detail - Pyruvate phosphate dikinase, PEP/pyruvate binding domain
        Distance: 0; Region: exon3 (5UTR)
    Flanking Genome Sequence: 13-5233-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CCCCAGCACT CACTTCATCC ATAAGATCAT TCAAATTCTG GGATCTTCTC
    TCTTTCTCTC ATTGTATTCA GTTTCTTCGT CTCGGTTCGA TCATCAGGTA
    TCTTTTTCAA TTGAATTTTA CCTTCAATTT CGATTGCTTT CGGTGTTTTT
    GTTATTTGAT TCAAATTGCA AATTTTCTTT TGATAGATAT TTTCGTTTTG
    ACTATAAAAG ACGATTCTTT TCTTCTTAGT GTATATTGCA CATGTTCCAT
    TCGCAGAATG AAGTAACTGT TTCTCTACAA AGTGAAAATA AAATAAAAAT
    AACAAGTGTG GTTCTCTTGT CTAACTCTGT CAGATTCTTC TTTTTGAGAC
    AAATAGTATA ACTTGTTCCT TTTTTTTCTC ATCTATTGCA AAAGCT

AT1G10760.1

Model type
Protein coding
Short Description
Pyruvate phosphate dikinase, PEP/pyruvate binding domain
Curator Summary
Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.
Computational Description
STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Link
InterPro Scan - TAIR