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13-5262-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19374480 [Map]; Strand: w
      • AT2G47180.1 - [+] show detail - galactinol synthase 1
        Distance: -4039; Region: intergenic
      • AT2G47190.1 - [+] show detail - myb domain protein 2
        Distance: -1722; Region: intergenic
    Flanking Genome Sequence: 13-5262-1 - 5-prime edge 
    ACATATCTAA TCGATGTAAC AATTCACTGA ATCGGGTGTT ACAAATAACA 
    TTTGTTTTCT TCACTAAAAG TATAAGATAC TGGTACAACG CGAAATCTAA 
    CCTATATTCG AATCAAATGA CACNGTCATC ACTTGGGTGT CTATTTGTCC 
    ACAGTTGAAA GTTATAAGAA GCAGACAAGT GTCTCATAAA GACATCGAGA 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19374364 [Map]; Strand: w
      • AT2G47180.1 - [+] show detail - galactinol synthase 1
        Distance: -3923; Region: intergenic
      • AT2G47190.1 - [+] show detail - myb domain protein 2
        Distance: -1838; Region: intergenic
    Flanking Genome Sequence: 13-5262-1 - 3-prime edge 
    AGATATGTGA TATAGACGAC AACCCAAATA AGCTAGTTTT TTTTTTTTTT 
    TTTTTTTTTT TTTTAANNNN AAAANTTTTT TTTTTNNAAN NGGGGGGNAA 
    AANNNTTTNG GGGNGGGNNT TTNCCCNNNN NNCCCNNGGN AAAAAAAAAA 
    AANCCCCCNN AAAAAANCCC CCCCNNNGGG GGNCCCNAAA AAANNNTTTN 
    AAAAAAAAAA AAAAANCCCN NNNNAAANNC NNANANNGGG GGGGGGNNAN 
    NNNCCCCNGG GNAAAAAAAC CCCAAAAANG GGGGNNAAAA AANTTTTNCC 
    CCCCCC

AT2G47180.1

Model type
Protein coding
Short Description
galactinol synthase 1
Computational Description
galactinol synthase 1 (GolS1); FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: response to high light intensity, carbohydrate biosynthetic process, response to hydrogen peroxide, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galactinol synthase 2 (TAIR:AT1G56600.1); Has 1198 Blast hits to 1197 proteins in 285 species: Archae - 0; Bacteria - 104; Metazoa - 258; Fungi - 278; Plants - 420; Viruses - 71; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47190.1

Model type
Protein coding
Short Description
myb domain protein 2
Curator Summary
Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.
Computational Description
myb domain protein 2 (MYB2); FUNCTIONS IN: calmodulin binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 112 (TAIR:AT1G48000.1); Has 8762 Blast hits to 8122 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 467; Plants - 5817; Viruses - 4; Other Eukaryotes - 1755 (source: NCBI BLink).
Link
InterPro Scan - TAIR