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13-5269-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17975348 [Map]; Strand: w
      • AT4G38380.1 - [+] show detail - MATE efflux family protein
        Distance: -248; Region: promoter
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: -428; Region: promoter
    Flanking Genome Sequence: 13-5269-1 - 5-prime edge 
    GCTCTAAGCA TATCTTTTTA TTTTTGCTGC GAAAGTGCGA GTGAGTCCCT 
    CTCATGATTA TAACAAACGA TTTTTAATAA TAAAAGATTT AATATTGTAA 
    TGCATCATTT TTATTCAAAA CCAAATTAAA AAAAAAAAAA ANGNNCNGGN 
    TTTTTTTNCC CCTTTNNNCC TTTTNNNNNG NNANCCCGNN NNAAANNNNT 
    NNGGNTTTGG NCCNAAANNN NNTTTTTTAA ANNNAANCTT TTTNGGGGGN 
    NCNNNTTTTT TTNAAAAAAA AAAACCCTTT TAAAANCCNN TNNANGGNGG 
    GGGGNTTAAA ACCCCNNNNT TNAANGGGNA ANGNNGGNTT NAAAAANAAN 
    NANCCGGGGN NGGNANCCCC CNGGGCCCNT NAANNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17975232 [Map]; Strand: w
      • AT4G38380.1 - [+] show detail - MATE efflux family protein
        Distance: -132; Region: promoter
      • AT4G38390.1 - [+] show detail - root hair specific 17
        Distance: -544; Region: promoter
    Flanking Genome Sequence: 13-5269-1 - 3-prime edge 
    CTTAGAGCGG TTTGGACACG ACCGAACGGG ACGCAGAAAC AAAAAGAAAA 
    GAAGATATTT TTCTTGTTTC TAATAAGGTG CCGATGTCAG TGGGCTTTAA 
    TGGGCTTAAC TAAAGAGAAG CAAAAGGCCC ATTTACCATC GTCTTCCCCA 
    AACAAAAACC GCCTCCCTGC AACGGTTAAC CCCTGATTGA ACCCTCTCTC 
    TCTCTGTCTG TTTCTTCGAC GATCTCTTTC GCACCGCTCA ATCATCCTCC 
    CGATTCCGTA AGTTTCGGTT TTGAATCGTT TCTTCTCCTC TGCCACTATC 
    GTCTTCTTCT CGGTTTTCTA TATCGTTTTA GTTTCTTTCA CCGTCGTTTC 
    TTTTCTCTCC CACGCTCATC CAATTTTCTT CCCCTAAAGA ACCGGAATTT 
    AGGTCAGTTA TCATCCTCGA AGCTACCANN

AT4G38380.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 13476 Blast hits to 13444 proteins in 2154 species: Archae - 331; Bacteria - 10835; Metazoa - 81; Fungi - 150; Plants - 389; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38390.1

Model type
Protein coding
Short Description
root hair specific 17
Computational Description
root hair specific 17 (RHS17); CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G20550.1); Has 829 Blast hits to 827 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR