1. Home
  2. Mutant Lines
  3. 13-5327-1

13-5327-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 308801 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5327-1 - 5-prime edge 
    GGGAAATTCA GTAGAAGCAT AACAAGAGAG AAGAAGCGCG CAGCAATAAA 
    AAAAAAAAAA NGGGGCCNTT TNAAAAANGG NTNNTTNNCC CGNAAAAAAG 
    NGNNNGGGGG GGGGGGTTNA GGGNNAAACC CTTTANNNGG GGTTTTTTNC 
    TNANCAANCC AAAGGGNNAA NNCNCCCCTC CCTNTTTNNT TTTTNAAAAA 
    ANAAAACCNT TNTNNNNGNC CTTTNGGNNN NNNNAANNCC CAAAATTNNC 
    NNCCCCCCCC CTTTNNNTAA AANNNCCNNA NTNCCCTNNG GGNNGGGGNG 
    GGNAANTCCN ANCCCNAAAN NCNTANCCCC CCAANGGGGN NTTTNAAAAA 
    AAGGGNNCCC NNGGGNTAAA ANNATTTTTT NCCCGTTTTN CAANTTTNNN 
    GGNNCNCCTT NGNNTNGGCC NTTTTTTTTT TGGGGTTNGN NNNNTNCCCC 
    CCCNGGGTTT NGGNCCCANA NTTTNCCCNG GTNNNTTTTT TNGGGCCCCT 
    TTNNGNTTTT TTANAAAAAA TTTATTTAAA ANCNTTTTTT TCCNANTCNC 
    CCCCCGGGGG GGTTNGNCCC CNCACCCCGG GGTNAAAANC CNTGGCNTNN 
    NNCANNNTAN CTAAAGGGGN NTTTGGGGGG NAAATTTNGC TTTTTTTTTT 
    TTANANNGCC NTTTTTTNAT TNGNCGNGNG AAAANCCNNN NGGNTTTTTT 
    CNAAAANGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 308685 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5327-1 - 3-prime edge 
    AATTTCCCAA TTTCGTCTCC TTTAATCCTT TTTTGGCATT GGCTAAAAAA 
    GTTCCTTTTT TCTGTGGATT ACGGGTTTTT TTGAATTTTT TAGGTTTTCG 
    CTTGATTGAA AAATCTTGAT TTTTTTCTAT GGAGATGATT GTAATGCNGG 
    TTTAGGGTTT TGCAGTTTGG AGCGTACCCG GTTTTTGTGG TTGATGGAAC 
    ACCATCACCT TTGAAATCTC AGGCGAGAAT CTCCAGGTTT TTCCGTTCTT 
    CTGGAATTGA TACTTGTAAT CTACCTGTGA TTAAAGATGG TGTCTCGGTT 
    GANAGAAACA AGCTGTTTTC TGAATGGGTT AGGGAATGTG TGGTAANATG 
    GCTTTCCCTT CAAACCTTTA TGCTTGTTTT GTTTCACATT GTTTTCTTAT 
    GACTTTTTTT GGTTCTCTAG GAGCTACTCG AATTGCTCGG NATTCCGGNG 
    CTGAAAGCTA ATGGNGAGGC TGAAGCTCTC TGTGCACAGT TAAACAGCCA 
    ANGTTTTGNG GATGCTTGCA TTACTCCTGA TAGNGATGCT TTCCTTTTTG 
    GNGCTATGTG CGTGATCAAA GACATCAGCC TAATTCAAGA GTANGTTTCA 
    TTNGGAACNG AGTATTANCC NGGNCTCACT TATCGNNCTT TACCATCNTA 
    ATTTCCTNGT GTGCAGGANC CTTTTGAANG CNCCCNTNTG TCCCATATNN 
    AGTCTGGCCT CGNTTNAANC NGA

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR