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13-5336-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3750051 [Map]; Strand: c
      • AT1G11185.1 - [+] show detail - other RNA
        Distance: 16; Region: intergenic
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 15; Region: intergenic
    Flanking Genome Sequence: 13-5336-1 - 5-prime edge 
    GTGGTTCTAA GAAAATAAAC TAGATTATTT CATTCAAGTA AACCTAGTTC 
    ATCTATAAAT ATTTGATTCC AGTCTAAGAC AAATGAGACC AAAAGCTAAA 
    TATTATAGAT CAAATTGATA AAGTAAATAA GAAATCTAGC ATCTAGAAAG 
    ATCACAATAT ATATATTTTA ACAAGAGAAA CTACATAGGA TTTGTACAAA 
    AATGAAATGA CAAAATGAAA TTGAACTCAA CAAACTAGAC ACTACAAGAT 
    CACCAATCTT ATCTCACTCC AATAAACCAC AGAAAATTCT AAAAAGTGAA 
    TGAAAATATT TCTGTGGGAA ATGAGAAGAT AGAAGATTAA GTTTAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3750167 [Map]; Strand: c
      • AT1G11190.1 - [+] show detail - bifunctional nuclease i
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: 13-5336-1 - 3-prime edge 
    AGAACCACTA TCTCTAAAAC GATCATACGA TGAATTAATA ACATTGAATT 
    AGCATATGAT CTAATGCTAA ACACTTCTAA ACAAAGCAGT CCACAGGCAT 
    TAGCTGTCAC ATAGATAAAG CTACTAAAAG AAAAGAATGT CTGATCAGCC 
    TTAATTAATT TTGTGAATGT ATCAAATAAT CTCTTAATCA AATGCTTTGA 
    TGCCCCGGTA TGTCGGGTTT GGTTCAAGTG GCAGCAACAC CAGCAATAGC 
    ATGATCGTCA CTAAAAACCC GGTTTAGTAT CATGGCTAGT CTAACTCCTC 
    CCTGAACTAT TCTCTTCATC ACTATTGGCA ACCTTGTATT GAAATATTCT 
    TCTGCAAAAT TATTTATCGG AAATTATTAA ACAAATCCTT TAGCTTTCTT 
    ATAAAATGAT ATATTAGACA GNCATATATC CCACACAGAA AANGTAGNGA 
    CTATTAAAAA TCATTAATCC GATGNATNAA ACTTTATTNG GTCGGGTTNA 
    TNNNTAAATA TTNGNGTTAN CGTANCGANA AAAAGGAAGA AGCNNGACAA 
    CAGGTACCTG ANTAACGTTT CACCAAACTT NGACGNCCTT TTNNTNCCCN 
    TTTNCCAGCC TAACNTTNTN ACTCTNNTNA NNCATACCGT GGNTNTTTNA 
    ATTNAAGATN NNNTCANNNA TTTATTATNT NGGCATCNNN NAACNAGAGN 
    ATTTTCTCAC NCCCNANNCA AAATCCTANA TAAGAATNTA TNCTT

AT1G11185.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT1G11190.1

Model type
Protein coding
Short Description
bifunctional nuclease i
Curator Summary
Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).
Computational Description
bifunctional nuclease i (BFN1); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, endoribonuclease activity, producing 5'-phosphomonoesters, single-stranded DNA specific endodeoxyribonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 701 Blast hits to 698 proteins in 200 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 98; Plants - 121; Viruses - 4; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR