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13-5362-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24064369 [Map]; Strand: c
      • AT5G59730.1 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59730.2 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: -109; Region: promoter
    Flanking Genome Sequence: 13-5362-1 - 5-prime edge 
    GATTCAACGA TGAGTTTGAG ACGTCGTACC GGAAACAGAC TTCGTGGGTT 
    ATACCCGACC CGAAACTTAG GGACCAGATT AAAATCACGT TGAGTCAGAA 
    ACTTATGCTG GTTTGTACCG AGTTTTACCG GATGAACCGG TTTGCATATG 
    GTATGGTTGG AGATAATGAG GCTATTTCCA GATATACCCC TGAAGATATT 
    GGGAATTACC TCTCGGATCT TTACTTTGGG TCTAGAGGCT CAGGGAGTGT 
    TTCGACAGCT GGTGGGTCTG GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24064485 [Map]; Strand: c
      • AT5G59730.1 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59730.2 - [+] show detail - exocyst subunit exo70 family protein H7
        Distance: 0; Region: exon1 (CDS)
      • AT5G59732.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-5362-1 - 3-prime edge 
    GTTGAATCTC GCCACCAAAA CCTTAGCTTC CTCCGGCGAA ATCTCATCCG 
    TCGGAATCTC CGGTAGTAAA TCCAGCACTC TCCCCCACGC AAGCT

AT5G59730.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59730.2

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H7
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H7 (EXO70H7); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H6 (TAIR:AT1G07725.1); Has 772 Blast hits to 760 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 5; Plants - 633; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59732.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G59730
Link
InterPro Scan - TAIR