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13-5430-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30141656 [Map]; Strand: c
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5430-1 - 5-prime edge 
    TTCTCATCGG GAAAAAAAAC TATATGTATA TGAACAGGTG AAAGGAGACA 
    TGAAAAAAGC AGAAGAGTAT TGTGAAAGAG CAATTTTGGG GAACACCAAC 
    GATGGAAACG TTCTATCTCT CTATGCTGAT CTCATTTTGC ACAACCATCA 
    AGATCGTCAA AGAGCCCACT CTTACTATAA GCAAGCCGTC AAGATGTCCC 
    CGGAAGATTG GTAATTTTGC AAAGTACCTT TCTATAATTG AACCAATTTT 
    GAAAATTAAG GAAAAAGACT TCATGATGAT AACAATATTG TGATGATGGA 
    ATGGTGCAGT TATGTGCAAG CT

AT1G80130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR