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13-5443-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 106830 [Map]; Strand: w
      • AT1G01250.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1500; Region: intergenic
      • AT1G01260.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2116; Region: intergenic
    Flanking Genome Sequence: 13-5443-1 - 5-prime edge 
    AAGGAACCAT TGAAATTTAC TTCAAGTAAT TAATACTAAT ATCGCAATCA 
    ATTTTTTTAT TGAAAAAATT GGGGAAATAG ATAGCAAGAG GAGTTACGAA 
    ACTCACTTTC TTCTTACATC AGATGAGACC ATACACNGGC CTTTACTATC 
    AGTTTTGTCT CCGGGTGCTT TCGTGTAAAC AATTTTAACA CTTGTTCGTT 
    TTTAAAACAG TAAGTAACTG AAAATATATA TGTATATGTG TGTGACGTAT 
    ATATGTATAT ATATTTCTTT TTTTATTGAG CTTCGAGATT TGTTTTTTTT 
    GTTCATACNA TGAGCTTTAA GTTTTGGTCG GTTCTTTTTT CCTTTTCGTG 
    AGTTGTTGGT AGATTAAAGT AGTCATCTTA TGATTTTTTA TTTTTTTGGN 
    NGNTACCAAA AAGGNGACNA TTTTGTTGAC GTTAAACACG GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 106714 [Map]; Strand: w
      • AT1G01250.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1384; Region: intergenic
      • AT1G01260.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2232; Region: intergenic
    Flanking Genome Sequence: 13-5443-1 - 3-prime edge 
    GGTTCCTTGT TAATATGTAG TGACGTGATG GGTTAAAATG TGGAAACCAT 
    AGACTTCAGG TGATATTTAT CAACTGCCCT TTTGCTTAAG GGATTACAAA 
    TCACCGTACG AAGACGTGAA TTTTCTTGTG ATACCTTAAA TTTTTCTTTC 
    CTTAAGAATG ATAACTTTAG CTAGTTGTCA TTTTTTTCTT CTTGTAATAA 
    TCGTACTACA TCATGGGAAA AGTTTATATT CTTTTGTAAT GGTAATTATA 
    GTAGCAAAAT GCAAAATCAT GAAAGACATT TTTTTTGAGT AGTACAGATT 
    TATGAGTGGT ATAGACTAGA GTTTANACTA TGGTCCCTTC AAAAAATAAT 
    CAATGCTAAT TTTTAAAAGC AACCTATGTG GACCTGCATT GCCCAAGTNT 
    ATCATATATA TAAAAGAAAA TAAATTAATA AGTTAATAAT TAGGAAAGGA 
    AAAGGGTTTC TTTGTANATA TATTTTCACG ATCATGGCAT GCATGCACAC 
    AAAATTACAC CTAACAAAGT GATTTCATTA TAATAATAAA TTATTGTAAG 
    CACACTTATA ATTTTCCACT GTCAGATACT TATTTTAACT TTGGCTGAAG 
    CT

AT1G01250.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25810.1); Has 5404 Blast hits to 5361 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5399; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01260.3

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1).
Link
InterPro Scan - TAIR