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13-5450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20901334 [Map]; Strand: w
      • AT1G55880.1 - [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
        Distance: -151; Region: promoter
      • AT1G55880.2 - [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
        Distance: -169; Region: promoter
      • AT1G55890.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -12; Region: promoter
    Flanking Genome Sequence: 13-5450-1 - 5-prime edge 
    GNNTAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCCCA GCTGAAACCC TTTGCTCTCA CTCCCAAAAC 
    GATGTCGTCT CTATCTCGCG TTCTCCGTGG CACCTTCAAC ACTTGCCCGA 
    TCCGCCGTTT TTCCTCCGCC GCCACCGTAG TCTCCGAACC CACCGCAGTC 
    ACTGCCGCAA TCTCGCCTCC TCAAAAGTCA CTAACCAGTC TCGTGAATGG 
    CGAACGAAAC CCCAAACGGA TCGTGGAGAA ATTCAAGAAG GCATGTGAGT 
    CGGAGCGGTT CCGGACCAAC ATAGCCGTGT ACGATAGAAC CGTGCGCCGT 
    CTCGTAGCCG CAAAGAGGTA GATACAAATA AATAATTTAA GCTGTAAGCA 
    AAAAATCGAG AATGTTTAAG AGTTAGGTNG CATGACGTTA AAGAAGGGAG 
    CAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20901289 [Map]; Strand: w
      • AT1G55880.1 - [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
        Distance: -106; Region: promoter
      • AT1G55880.2 - [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
        Distance: -124; Region: promoter
      • AT1G55890.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -57; Region: promoter
    Flanking Genome Sequence: 13-5450-1 - 3-prime edge 
    CAGTTCAGCC TTCAGGAGAC GGGTTTAAGA ACAAATCAAA TGAAGGACGC 
    ATCTGATAAT TTAAAAAATG TTAGTGCCTT ATTTTTAACT AAAGGAAATA 
    TTGGGGGCTA GAATAACAAA TAATAGAAAT AGTGTTGTTT TGCCGACGAC 
    CTAATTTTAC TTCACCGGTT TGATTACGGG AGAAGGCGAG CTTGAGCTTC 
    AATGGCGCCT GTTAATATGA CTGGCGCTGT TGTTGCAGCA GCGGCGTTGT 
    TGATGCTTAC TTCTTACAGC TTCTTTTTCC GTCTCTCCGA GAAGAAGAAG 
    AGGAAGGAGA AGTTGACTAT GAGAAACGGG CTTGTTGATG CCATTGGAAT 
    TATTGTTTGG AACAGGCGCC ATTAATACAA GAATATTGGT AACTGGCTTT 
    TCTCCTGTCG AGTTTGGGAA AAGATTCGGG AGTTGCATCA ACACCATCTT 
    TGTTTAGCCC TTCGTTCTCT ACATCAGCAG ATTGATTGAT GTCTAAAAAT 
    TCAGCAGTTA AAAGTTTATT TGCAGCACTT GGAGCTAATC AAGGTATAAT 
    ATTGTAAGAA TGTCTAGATA TGAAAATCAG TAAACACAAA AAAGTTTACC 
    TTGTACTATT GCTCCTAAAC GAACATCATC TTTGTGACTC TCGTTCTCAT 
    CATCCACAAG TGCAAGATCA TTCTCTTGGT CAGTCGTAGC ANCACTTTTT 
    CTCCCTTTTC AAG

AT1G55880.1

Model type
Protein coding
Short Description
Pyridoxal-5'-phosphate-dependent enzyme family protein
Computational Description
Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, metabolic process, cellular amino acid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: L-cysteine desulfhydrase 1 (TAIR:AT5G28030.1); Has 17388 Blast hits to 17372 proteins in 2648 species: Archae - 443; Bacteria - 11523; Metazoa - 365; Fungi - 537; Plants - 503; Viruses - 2; Other Eukaryotes - 4015 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55880.2

Model type
Protein coding
Short Description
Pyridoxal-5'-phosphate-dependent enzyme family protein
Computational Description
Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, metabolic process, cellular amino acid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: L-cysteine desulfhydrase 1 (TAIR:AT5G28030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55890.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G13160.1); Has 41765 Blast hits to 13385 proteins in 277 species: Archae - 5; Bacteria - 48; Metazoa - 331; Fungi - 377; Plants - 39933; Viruses - 0; Other Eukaryotes - 1071 (source: NCBI BLink).
Link
InterPro Scan - TAIR