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13-5467-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7266021 [Map]; Strand: c
      • AT1G20880.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -583; Region: promoter
      • AT1G20880.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: -862; Region: promoter
      • AT1G20890.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-5467-1 - 3-prime edge 
    CAAGANGAGA GATTTCTCTG NGNGAAANAA ATGTNATGGT GNATGGAGAN 
    GNATGCAAAA GAGGATGGGG GTCCTNTGNT NGCTNCNNTG TGGCTACCNN 
    CGTGGGTCCC AGCAGATCAC CAGNCTNCNG GAGGTNTNNC TAGTATCCTN 
    GNNNACNACC NGCCGANTAG TNGANGCACT TTCGNGCCTC TTTAANNANT 
    ATAACGCCCA NNTGNNNTGT ATGTCTTATG GATGCTCTGA TAANCNNACC 
    TTCCCAGGGC TGTCAANCNA NAGCAGTNCC TCNNACTCTA GAAGAAGCAC 
    TACACTCAAT ACAAGTTCTT ATGTTGTGAA AAGAAGAAGA TTGATGAGAT 
    AGTAAGTAGA AAAAAAAGCT

AT1G20880.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1); Has 7701 Blast hits to 7638 proteins in 709 species: Archae - 59; Bacteria - 219; Metazoa - 3282; Fungi - 4; Plants - 1889; Viruses - 133; Other Eukaryotes - 2115 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20880.2

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1).
Link
InterPro Scan - TAIR

AT1G20890.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR