Home
Mutant Lines
13-5469-1

13-5469-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 24391465 [Map]; Strand: w
- AT1G65590.1 - [+] show detail - beta-hexosaminidase 3
  Distance: 258; Region: intergenic
- AT1G65610.1 - [+] show detail - Six-hairpin glycosidases superfamily protein
  Distance: 214; Region: intergenic

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATNCN 
NNCANACNAC GTTTCATCCC TGACGGCCAG CGACTACAAA ATGAATAAAA 
ATATATCACT GGTCGCTTAT TGAAGTCACC AATGACCAAA TCATGCTCGT 
ATCGTAGTCG TCTAAGACTG AATCATGTTC GTTTAATAGT TACTAGGACA 
AAAGACTAAC AACTGAGTGA TCCAAAATCA TCTATTTTTA AATGTTTGTT 
TTGTATTTTC ATGTGGAATA TAATAGAATT TTTTTCAAGA AAAATACTGC 
ATTGATTTTA TTATGTTTAC ATATATAAAG GAAAAATAAA ATTGATATAG 
TTATGTAACC AAGTAATAAA AAAAAAAANA TNGANTTTAN CANGTTTAAT 
TNAANCNCAG GGNCGTAAAT NCAATNTTTT TNANGGNTTC CAGGNTTTAG 
GAGGGGGGGG AGNCGGAAAG TAAAAAGGNG GAACCCTTTN GAANATNGGG 
TTNTTNTNAA TTNGNGGGCC NCCNNTGNNG GTTAAGGAAA CAAAACCANC 
TNCAAGGCCN GNNTTNCCAA AAAAAGTNGG CNCCNTNGNN TTNNAATNGT 
TNCCCAGGTC TTGGAACNCN TCAANTTNGT TNGGGCCACC AACCANANCN 
CCTGGNATGT NGTTGGAATT GGGATNCTTN GGGNCTNTAA ACTTAAATCC 
TTTTTTANNG NTTNTCCTTT TTTNGNCNTT GGGGATCGGG GCNCCNNGGG 
GATNAACACG TTTTGGA

3 prime edge [+] show sequence

Chromosome: 1; Position: 24391420 [Map]; Strand: w
- AT1G65590.1 - [+] show detail - beta-hexosaminidase 3
  Distance: 213; Region: intergenic
- AT1G65610.1 - [+] show detail - Six-hairpin glycosidases superfamily protein
  Distance: 259; Region: intergenic

CNGGCCGTGC NTTGATACTN GCATGCCGNT NGNCGATANT TCTGTGACAG 
TTTTGGTCAA CTANCTACTA AAAAATGTCG GATGGCTGAA ATTNTANCGT 
TGTTGCTGGG GTCAACAAAA CAAACATGAT TTAGTCACGT AGCGGAGCGA 
TTGGAAAACA AACATGACCA CATCTCTTTC TTGGTAGTGA TGGTTCCCTC 
TNTATCTTTT CATATTTTGT TNCTCTTTCT CGTTTAGATA CCAAATATTA 
TGATTTTTGA ATGTGGTATG TGCAAACTAT GTATTCTTAT TCAAGCCTGA 
AATTGGNAAG GCCTTTTATA CATGAATGTT GCAACAATTA TTCCCAAATA 
AGAAGGAATA TTTCTACCAC TAAAAAATCA ACCAAGAAAA AAATTCAAAG 
TATCCCTTTT TTGTAGGGGT TCATTTCAAC CTGAATTGAC CAAGGTGTTG 
CTGACTGTAA TATATTCTAC AATGCTAATC TTTCGAATCA CTGAGCGAGA 
CAAGAACCTG GTTCAAAAGG CACAACTCGT CCGCCACCAA CCAAAGGTGC 
AGCCTGCAAC CTCCTCTTTG ATTCAATAGA CATCTGAAGT GAGCCAACCT 
CGTCGNTTAC ATTGTTGGNA ATTTTTAGCC AATTTTGCAT AGGGTGTCCA 
CAACCGCTNT TTCCAAANAN AAAATATTTT TTAATGGTTT ACAAANANGG 
NAAAGGNTNT TTTAAACTTA TAA

AT1G65590.1

Model type: Protein coding
Short Description: beta-hexosaminidase 3
Curator Summary: Encodes a protein with beta-hexosaminidase activity. Located on the plasma membrane.
Computational Description: beta-hexosaminidase 3 (HEXO3); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 1 (TAIR:AT3G55260.1); Has 3849 Blast hits to 3760 proteins in 723 species: Archae - 6; Bacteria - 2490; Metazoa - 475; Fungi - 225; Plants - 125; Viruses - 0; Other Eukaryotes - 528 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G65610.1

Model type: Protein coding
Short Description: Six-hairpin glycosidases superfamily protein
Computational Description: KORRIGAN 2 (KOR2); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, sepal, root, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A1 (TAIR:AT5G49720.1); Has 1630 Blast hits to 1606 proteins in 228 species: Archae - 2; Bacteria - 483; Metazoa - 181; Fungi - 17; Plants - 907; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link: InterPro Scan - TAIR