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13-5600-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1359013 [Map]; Strand: w
      • AT3G04910.3 - [+] show detail - with no lysine (K) kinase 1
        Distance: 853; Region: intergenic
      • AT3G04920.1 - [+] show detail - Ribosomal protein S24e family protein
        Distance: -1869; Region: intergenic
    Flanking Genome Sequence: 13-5600-1 - 5-prime edge 
    GATGTACTAC AAGAGGAGGG TGGGCACGTG CCCCATGCTA AATTTTGAAA 
    AAATCAAATT GATCATTATA CATTTAATTA CCCTAGCTCA TTTGGTAACA 
    AGTGCCCCAC ACAATTTTTA ACCTGTGGAG TTCGATTCCC TTCTGTAGTT 
    TTTGTTTTGC TTATTTTTTT TTTNAATTTT NGTTNGTTNG TNGCCACAAT 
    CNACACATCC TTTNATTNAC TNGTTTTCTN ACATTTTTTN GTNCCTTNTT 
    TATGCTNAAA TAGTNGCATT CCCTNGTTTA ATTTTTNTTT TNAATN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19802998 [Map]; Strand: w
      • AT1G53140.1 - [+] show detail - Dynamin related protein 5A
        Distance: 400; Region: intergenic
      • AT1G53160.2 - [+] show detail - squamosa promoter binding protein-like 4
        Distance: -3421; Region: intergenic
    Flanking Genome Sequence: 13-5600-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CGCCCCTGAT GATGAGTGAC ATGGAGGAAC ATCTGGATTT ATGCATGTGG 
    ACACTTACTA TTATGTTATG TTGTGTCTCG TTACGCCATC AAGTTTCACC 
    AAATCTTTTT GTTTTTTTCT TGTTTTTCAC CATTTTTTTT GTCTTTCTAT 
    ATGTTTGTTT ATTTACATAT ATCTCCTATA CGATTACAAA TNACAGATAA 
    ACCCATATAT TTCTAACAGA GCACTCCTTC AATTCTCATG TTTTACATAT 
    TCTCCCGAAT CCCATATCTT TATCGGCTTT CTTGTATAAG GAACATCATT 
    TGGCCCTATA TGGAATT

AT1G53140.1

Model type
Protein coding
Short Description
Dynamin related protein 5A
Curator Summary
Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.
Computational Description
Dynamin related protein 5A (DRP5A); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: cytokinesis; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin, GTPase domain (InterPro:IPR001401); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G19720.1); Has 2347 Blast hits to 2342 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 1001; Fungi - 589; Plants - 464; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53160.2

Model type
Protein coding
Short Description
squamosa promoter binding protein-like 4
Curator Summary
Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.
Computational Description
squamosa promoter binding protein-like 4 (SPL4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of vegetative phase change, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squamosa promoter-binding protein (InterPro:IPR017238), Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 5 (TAIR:AT3G15270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04910.3

Model type
Protein coding
Short Description
with no lysine (K) kinase 1
Curator Summary
Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.
Computational Description
with no lysine (K) kinase 1 (WNK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, circadian rhythm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G28080.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04920.1

Model type
Protein coding
Short Description
Ribosomal protein S24e family protein
Computational Description
Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR