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13-5638-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 57630 [Map]; Strand: w
      • AT1G01120.1 - [+] show detail - 3-ketoacyl-CoA synthase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5638-1 - 5-prime edge 
    GGGNTAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TAACAAAATC TATATAATTG GCACATGGCC AATCTTTGAG 
    ATCAAGATTC TTCTGCACTT CGTCTAGAAC CGCTCTACCT CCTGCGTGAA 
    TACAGAAATG CTCGAAAGCT AGCTTGAAAT CCGGAATATA CNGGTTTAAC 
    TTTTAACTTG AACATCTTCC TTTTGACCAA GGAAATCAAG AACATCAACT 
    GCTCTGACAA TGGAAGAACC ATCGGTCCTA AAGTCGTGAT GTTTGTTTTC 
    AGAGCGTCTC CGGCGACAGA CATGAGCTCT CTAGCTAAAG AGACACCGAT 
    TGTTCCTCTC TCGTCTTCCT TCTGGTACAC GCAATTGTAG TTCTTGTCGT 
    CTGATCCTTT ATGTGTTCGA ACGACGTTGA CCAGCGAGTA CTTTGACTTC 
    TTCCGGTCTT GACGGCGGTT AGAGAGGAGA ATCGCAGCTC CGCCCATTCG 
    GAAGATGCAG TTGCAGAGGA GCATTGACCG GTCATTTCCG AAGTACCAGT 
    TTAGGGTTAT GTTTTCCGTG CTTACCACGA CAGCGTAAGA ATTAGGGTTT 
    GCTTTGAGGA GATTGTTAGC GAGATCGATT GAGATTAATC CGGCGGAGCA 
    ACCCATTCCT CCGAGGTTGN AACTTTTGAT GTCTTCTCTC ATCTTGTAAT 
    GGTTCACGAT CATCNCTGAT AGAGACGGCG TCGGATTGAA TAN

AT1G01120.1

Model type
Protein coding
Short Description
3-ketoacyl-CoA synthase 1
Curator Summary
Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis.
Computational Description
3-ketoacyl-CoA synthase 1 (KCS1); FUNCTIONS IN: fatty acid elongase activity, acyltransferase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosolic ribosome, endoplasmic reticulum, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 11 (TAIR:AT2G26640.1); Has 3961 Blast hits to 3946 proteins in 966 species: Archae - 0; Bacteria - 1388; Metazoa - 0; Fungi - 5; Plants - 2408; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link
InterPro Scan - TAIR