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13-5673-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1049833 [Map]; Strand: w
      • AT1G04050.1 - [+] show detail - homolog of SU(var)3-9 1
        Distance: -536; Region: promoter
    Flanking Genome Sequence: 13-5673-1 - 5-prime edge 
    GATCAATGTA TCTCTCTGTC CAAAGAAAGA CGACAATTTG AAACTTTAAA 
    AGACGAAGTG AGGAAAGAAA AGTGTATACT CTCCACGAAG GAGAGTCTTC 
    AAAGATTTGA GAAACGCAGC GTTTGGGAGT CGTCATTGAC TTTTTCTGTA 
    TGAGGCGAAT AAGACAAACT AAAAGTGAAC CTTTCTCTCT CTCTATGCAG 
    TGTCAGTATG ATTGACTGAT TTTACTCCTT CGAGTTGACT GGTTTAACTC 
    CTTTAAATCA TATGGGCTTC ATCAAGTATG GGACGGCCCA CAACATATGT 
    TTTTTCTTTT AAGCGATTGG GTCCAGGACA GACAACGTTT TGTTCTACTA 
    CAATTGAATA ACCCAGGGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1049756 [Map]; Strand: w
      • AT1G04050.1 - [+] show detail - homolog of SU(var)3-9 1
        Distance: -459; Region: promoter
    Flanking Genome Sequence: 13-5673-1 - 3-prime edge 
    TTGAAAACGG TAGAAGGTAT TTTACCGACC GTTACCGACC GTTTTCAAAA 
    AATACGCTTA GCATAAGCAA ATCTACCATC AGTTTTTCAC TACATTCTCT 
    TCTCTGAGGA AAGTCGAAAA TCCGGTTCTC TCACTACAGA GTCTCACTCT 
    CTTAAAACCC TAAATCAGTT TCAGAGTTGG TTCTTTTGCT TGTAAGTTCT 
    TCTCATTTTT TCTGCTAAAG CT

AT1G04050.1

Model type
Protein coding
Short Description
homolog of SU(var)3-9 1
Curator Summary
Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression.
Computational Description
homolog of SU(var)3-9 1 (SUVR1); FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: SET-domain containing protein lysine methyltransferase family protein (TAIR:AT5G43990.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR