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13-5675-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29602641 [Map]; Strand: w
      • AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: 0; Region: intron1 (CDS)
      • AT1G78710.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
        Distance: -67; Region: promoter
    Flanking Genome Sequence: 13-5675-1 - 3-prime edge 
    NTTNNNANNG ACNANNNTTN NNNTGNNTAN ANNANGNGNG CNNNATCTCT 
    GNATGANTGT CAGATNTNCN GTATAATNAG NTAANNANNN TCTANNATNG 
    GGANAGTNTN TAGCCGACNC TNNNGNNNAG ANGTACGNNC NNTANANCCA 
    GTAGCAAAGA TNGTGANTTA ATCTTTTGGT TAATTGGACT AAGAAAAAAA 
    TTACTTTCTC TTTTCGTAAA ACTTATTAAT TGAGACGCAG GATATATACA 
    TTCTTACGTT TAATTTCACT CGATTCAGAG TCTTCCAATT GGTGGTGACC 
    TCTTGCGTAA CAATATGACA ACATAATATT TACTGAATTA AAATATTTTT 
    ACTGAATGTT TTTTTTTTTT TTTTTTTGGA ANNGNNTTNG NNNNNGGGNN 
    CNNTTNAAAN TTNGGNCCCA AANGGNAANG GNGGCCCNNA AAAAAAGNTT 
    TTTTTNAGGG GGGAGGNNAA ANGGGGGGGG NNAANCCCCC NNNGNTTTTT 
    TNNAAAACNN NNNGNGGNNA

AT1G78710.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 42 (TBL42); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT2G31110.2); Has 1333 Blast hits to 1315 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78710.2

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 42; INVOLVED IN: biological_process unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1785 Blast hits to 1336 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR